87c478b1e65bf8e39cb1b20958bd5f8a *DESCRIPTION
371ccebc42e03b695acd5dc839460126 *NAMESPACE
b8d4d0ce8134117ac877bb7cd6d21027 *NEWS
941b36811b0593060f00084e7f348124 *R/Allclasses.R
55202bf6c7d60f496b61c42633b0f558 *R/DEscore.R
700aa4b06d8c0bc7afaffed8c8cecf69 *R/DSscore.R
dbffb73850478190fd040b245fca7aad *R/SeqGSEA.R
4ee9ed1114d97b90ea867c1648ba0eaf *R/estiNB.R
8219a79b8add6ad0f1420bb6868291dd *R/plots.R
b1cf6608877d43a868edd7867afb5c52 *build/vignette.rds
0de951c8acb635491137dd18ea274d3c *data/DEscore.RData
f428a2fb01a1897186df10ac9200cb88 *data/DEscore.perm.RData
01eb20f550590c90a09c3c66be19cfe3 *data/DSscore.RData
0dde568ce46206f2cdfd093e657ec717 *data/DSscore.perm.RData
1329bfa58cd12a17be862b75e63f0d28 *data/GS_example.RData
32415601bef23b9cd7a3f287920787e2 *data/RCS_example.RData
aeab950bee58fcca0c51dab3766b6a3e *inst/CITATION
d3142aa62f12843aeeae6be30ff70093 *inst/doc/SeqGSEA.R
7dd8d31cec3c289642839546002bd14d *inst/doc/SeqGSEA.Rnw
45cd1deba173bacd17c9c5b00369dbae *inst/doc/SeqGSEA.pdf
aa55e94bc8a566642e2185b96a3af157 *inst/extdata/SC02.exonCnt.txt
0db4255cfc2712875daef3b4cad2fb30 *inst/extdata/SC03.exonCnt.txt
a5b3f6a1fd87583872c6e125787769a0 *inst/extdata/SC06.exonCnt.txt
46c91a7af23910fcec920eba62d31181 *inst/extdata/SC08.exonCnt.txt
7e5ce78db9689017625c617ef766d9a7 *inst/extdata/SC09.exonCnt.txt
50040700402df45704b7818bdaa5939c *inst/extdata/SC11.exonCnt.txt
8e9b647d49feb3eeebf4f08cacfaa264 *inst/extdata/SC13.exonCnt.txt
744f526772bc3c5e2339960a069fc5b9 *inst/extdata/SC15.exonCnt.txt
9cbbedac1f57b91f4d54fcd0dcbea92e *inst/extdata/SC19.exonCnt.txt
cf06c735cdfcd748ae4952306916f00b *inst/extdata/SC23.exonCnt.txt
82ea07828e987a34016fd6df0a0ae8b7 *inst/extdata/SN02.exonCnt.txt
69dbf83514ff2e35b2e049fb682598b9 *inst/extdata/SN03.exonCnt.txt
d7d5badfedd65d3be5afc63b7b8ad767 *inst/extdata/SN06.exonCnt.txt
4d1b6d41d721cb6e4c7568da2f374976 *inst/extdata/SN08.exonCnt.txt
92d7d1a7b75d1553e25fd7c6716185da *inst/extdata/SN09.exonCnt.txt
56e14a678cad226729b15bfe71ebcdb8 *inst/extdata/SN11.exonCnt.txt
b55cbbb76d20758c07cb8acadab0bac6 *inst/extdata/SN13.exonCnt.txt
ba8e84b422451b2cb406e271f6ecf700 *inst/extdata/SN15.exonCnt.txt
e4de0cb79dae4a7617e82b961cba6c14 *inst/extdata/SN19.exonCnt.txt
45b051c29bb812d73224c2e5db2e33d6 *inst/extdata/SN23.exonCnt.txt
99a21bc95ce21d5613695746794ff2c3 *inst/extdata/geneCounts.txt
e10c7313a4977ab1016ee89dca648b14 *inst/extdata/gs_symb.txt
c4beb55cebd8c597c3193a087ae50783 *inst/extscripts/count_in_exons.py
2849d48898b0f98630609b8806b285fc *inst/extscripts/prepare_exon_annotation_ensembl.py
3fd83cc194195f2ccbff8d751d4c7463 *inst/extscripts/prepare_exon_annotation_refseq.py
000ad3b18c83e8a3c2d13b8a35469c74 *man/DENBStat4GSEA.Rd
1d149be7989510e3f3006200af8c21a7 *man/DENBStatPermut4GSEA.Rd
fa0ae568acee1b5766419f5443654804 *man/DENBTest.Rd
ecce5abcba34e5cfbcfa9c8e127f0e54 *man/DEpermutePval.Rd
88b7ebc961eef08dde7b9a1115e56d57 *man/DEscore.Rd
302ae7030ed8542636bb5bf4d6b0b21f *man/DSpermute4GSEA.Rd
a9ad4488cefcce1e55b6c5d96d7ccf1a *man/DSpermutePval.Rd
3b0177bced04a9c4149fe898faccf19c *man/DSresultExonTable.Rd
99a8b9c787d9f21fcd9099b32252313e *man/DSresultGeneTable.Rd
c47f6ce24735d3b208032ecb5ea9bb22 *man/GSEAresultTable.Rd
e434cb0b1f4b9d67e67d6d5bd1805e0d *man/GSEnrichAnalyze.Rd
9b17a98cb66b33c13fe812a0a14f7d8b *man/GS_example.Rd
c69975d922922430f63d3bc236818e5c *man/RCS_example.Rd
7062c7c4149c1479eba67e83815280b8 *man/ReadCountSet-class.Rd
1db8011dacfefaafb7557623cd3a9bb6 *man/SeqGSEA-package.Rd
16d3b8e569b8e1bd91afe42a8c282786 *man/SeqGeneSet-class.Rd
0beba64ad24e3cf648e495dedd3a3326 *man/calES.Rd
78e575ef318f8ddf0eee436303b2a8a3 *man/calES.perm.Rd
bda4c628729787ec305e775a47b0dc0d *man/convertEnsembl2Symbol.Rd
bdf858b87a6681dcaa8cff885ee91d66 *man/convertSymbol2Ensembl.Rd
6303b585a2b3d9e635a2aee67193e6cc *man/counts-methods.Rd
2760e5b8fd59e24478be63eb80db63e0 *man/estiExonNBstat.Rd
25fc5b99f7b21f16efe5d05213612e75 *man/estiGeneNBstat.Rd
646689fd1aec52a1091d1ad27e8610fd *man/exonID.Rd
fbaaa6fdbb1c044c049fbecd694fd688 *man/exonTestability.Rd
50d5c00d2183c619afceb8822ee039e1 *man/geneID.Rd
d9cf72e37de4740a22f4ab2557c18c5d *man/geneList.Rd
5cae79945e40c18f9a79410aa266d125 *man/genePermuteScore.Rd
bf2811118d241f1b937c387d40d6a39f *man/geneScore.Rd
287e8ca333528558a13c1bfc558a3c59 *man/geneSetDescs.Rd
8170366ca3a22b61bef79ef242f79783 *man/geneSetNames.Rd
2e76829ab345eda08f04e8342db88af5 *man/geneSetSize.Rd
91573768852535382e50620bbae81b4a *man/geneTestability.Rd
80081e6a569b81c5710037c30523e6fa *man/genpermuteMat.Rd
dc0a39a4f1dda5a46b8b1073c6ddca9c *man/getGeneCount.Rd
72539bd0a1e8cd860f2c16f9da1dad98 *man/label.Rd
2f1cf69d4637bc0b127686d6989d7859 *man/loadExonCountData.Rd
5db3f8eb1e2693d494300077ba0c5cdb *man/loadGenesets.Rd
a3fd167ea85945e6e255c99f397d9065 *man/newGeneSets.Rd
54661c05230869228c76cad32eadb6df *man/newReadCountSet.Rd
0b07ae9ee2b38c96099ab9089936d48e *man/normES.Rd
c1949be9dea05bb6bf2ac3e1ab4adc87 *man/normFactor.Rd
9ddbd5db791f417ddf38a741e6f36eb4 *man/plotES.Rd
0bf32399262645db526c08e17eb268ec *man/plotGeneScore.Rd
c487fbff2b21bf57e37cafd0c5cc47a7 *man/plotSig.Rd
baad857ee54d2fcf7e16cabc9b5883b7 *man/plotSigGeneSet.Rd
8b88b2e47733ba960617ad372ea19ee5 *man/rankCombine.Rd
2ad7ee997c0fe0a498e7697215c24736 *man/runDESeq.Rd
7322822dfad9e02b5c07294e368e890f *man/runSeqGSEA.Rd
5054c4d2b6af643e915dc28a6e8846f5 *man/scoreNormalization.Rd
b519f7b56d4509729311c13587a0a498 *man/signifES.Rd
ec3c4cf1db701571e050b6d47f5cede5 *man/size.Rd
e9b07592b8e2c1f717a530931ec3ba4c *man/subsetByGenes.Rd
a3870aac4688256b49f3345d9e39e0fb *man/topDEGenes.Rd
7e6b8a8ff1fcd80e76d35ac8d29f7d92 *man/topDSExons.Rd
4eadf0eabdfb20d1c78b161e1c06a3c1 *man/topDSGenes.Rd
15bb4a78ed8f911b51fc91fca4988625 *man/topGeneSets.Rd
652fe934d4062cabe75acd37425f8968 *man/writeScores.Rd
1445e7563a92358097918a24db169382 *man/writeSigGeneSet.Rd
7dd8d31cec3c289642839546002bd14d *vignettes/SeqGSEA.Rnw
f1da12485bdfc09724fd45e3bb878417 *vignettes/SeqGSEA.bib
