8e1050aa020ea4f9315ad88325bf17d6 *DESCRIPTION
33a6e385ddcee8ead6f46fd0176ebde6 *NAMESPACE
82a82ac183863dae68d59ed3a6e462b2 *NEWS.md
176eaf9f66247583e9bff6c767e1df72 *R/SE.R
bcf4a11238bd4d66eab0b430914dce1f *R/basilisk.R
72fe4587572a4a6fd70bcd9921d59af5 *R/doc-data.R
3c2d2a9d835f93136248ea7bc4adb4f7 *R/estimate_funcs.R
2da31cc9a6464e150f3eddda0bfbbd42 *R/pipeline_impute.R
681b67aa349cf2e6930a2475d5dba18c *R/pirat_utils.R
84edcfc4e585aa5754ca388cb2eea562 *R/plots.R
2e04ac66516ca0dc578118bb8c8e8ff6 *R/split_funcs.R
0a2f72c028bbc3300f3310214c78c41f *README.md
f157fe3db29b9bc6eb000972009a3e39 *build/vignette.rds
bc820524c5a642cd847a24985b00d5a0 *configure
0fbe454f32a294f63b628cc56eea685c *configure.win
3e1d94b5e64958d1dda761e8289f9ec8 *data/datalist
0012f4df19d67b94ee0c7141dbf57c5a *data/ropers.RData
b24717f6af926d22b147b97c9c23c9e2 *data/subbouyssie.RData
554cbfd034e364f271f9f1648160ec55 *data/subropers.RData
e91c27114d19bf8a394e719c98e7e4f6 *inst/doc/Pirat.R
67db88b28f8571e0a157568037dfd5f0 *inst/doc/Pirat.Rmd
ec07b6fcc8018e6c496c312ea1ca117c *inst/doc/Pirat.html
6bf38ebbe534b938ab8a1931df357d55 *inst/myModules/PyPirat/LBFGS.py
608cac35a7a0fb37a605b0b91b7cd229 *inst/myModules/PyPirat/__init__.py
22520dab0eae9b98bec1ae408f76364d *inst/myModules/PyPirat/llk_maximize.py
95482257a20605eab800f51958588170 *inst/myModules/setup.py
7386325e5b24b2609ede4c09c152e73c *inst/python/__pycache__/LBFGS.cpython-39.pyc
b7e542cbee5c36d99c3fec9d6fb0b8e5 *man/envPirat.Rd
b97479ff84dff186f8e8492def94ec17 *man/estimate_gamma.Rd
43ea8b2cb501c5015d8a0c41d05725b8 *man/estimate_psi_df.Rd
427b377fa9c179beb41ab9825d255e22 *man/get_indexes_embedded_prots.Rd
b8955cfb53279613914834c802d1c083 *man/impute_block_llk_reset.Rd
7ca8445a43d847042683f3c36affc1ab *man/impute_block_llk_reset_PG.Rd
c7a3c45a1554a6c68b6dc101bc281b22 *man/impute_from_blocks.Rd
5fcd6d564686a1ddf2e3b6b57066ebda *man/pipeline_llkimpute.Rd
f636351bab0ed7b683a0a83d1095e0f1 *man/pirat2SE.Rd
cd5bda85dd5baa51e883d67f6e1c9a46 *man/plot2hists.Rd
b2fc719c437ab9642a724af396efb6b3 *man/plot_pep_correlations.Rd
bb67245a5dde1d33d0a818630ec527b9 *man/rm_pg_from_idx_merge_pg.Rd
30a95d2df170e0206d8a9ec15ecaa9c0 *man/ropers.Rd
8f0779ce68be6193a7cf4d983130aa2d *man/split_large_pg.Rd
cc161da9fe76f9a9d9cf6cb816687c27 *man/split_large_pg_PG.Rd
38d67b07e2918e2a8b79529f516e9e6d *man/subbouyssie.Rd
feab58ca6016d8fbd972f814091af1d4 *man/subropers.Rd
368a3336230885a6c6ad7fcb29ddaea5 *man/wrapper_pipeline_llkimpute.Rd
d41d8cd98f00b204e9800998ecf8427e *tests/test_pirat.R
67db88b28f8571e0a157568037dfd5f0 *vignettes/Pirat.Rmd
460d0bc5c4a6ca37686334259ea326b1 *vignettes/biblio_vignette.bib
460d0bc5c4a6ca37686334259ea326b1 *vignettes/biblio_vignette.bib.txt
3efe8784b0a89812ac8e04c913c95694 *vignettes/figs/plot_pep_correlations.png
