9e1cec72a32aa3b23e774ac1e1a716ba *DESCRIPTION
f643718a7551561c0d442faa24688a08 *NAMESPACE
64850b61b619186ba39a356d074c88f6 *NEWS
8e00fa1223cad6bf146ad1f3019e1955 *R/AllClasses.R
c3514908d395b3824d1d412dd9718257 *R/AllGenerics.R
537b5a5a636a652b8585e1b20bf0b1be *R/coercion-methods.R
96970b8d61cb0de0089e0121b0d373a3 *R/datasets.R
9628af6d0138d3ba1a2e777243c899a3 *R/defunct.R
d8360935744576cce2ef87876d882a4e *R/functions.R
3f90c71e4d3040c34e7d21d45b7b1d39 *R/generator-funs.R
61d949d913bb239bae842c38c10cf513 *R/help.R
6c38e313e1f535c1e2f262cbaa74ef48 *R/lattice-methods.R
41582a36e02812bd21157774503d94e4 *R/mad-methods.R
947bf76516cd4e070406f3276a87ae45 *R/methods-AnnotatedDataFrame.R
bb10039abb28394ec550a97edbf7c0f8 *R/methods-AssayData.R
91616e4aa7d933d842b44446ad985a4f *R/methods-FileViews.R
9c285c0ce8a0741b2f50c2fe35dc515e *R/methods-FilterParamMD.R
0653bfa7c27755c94c4e451c0acba81e *R/methods-ILimit.R
e00142991f6b083d479390ba4c5d1516 *R/methods-MDRanges.R
e1082eabab54cc4b26cf2069b39614da *R/methods-MinDistExperiment.R
fdc33dc62a2182f578d4a5e93fa2d3f2 *R/methods-MinDistGRanges.R
f56858e15e4c5c38b0f022af87f95cf2 *R/methods-MinDistParam.R
6def6f83154c1a449cc882300bc4ab54 *R/methods-MinDistPosterior.R
ce7c6bb22e62ab80aa51438f028bb32b *R/methods-ParentOffspring.R
3add8c274bd03c207e4fbdf15af8dde3 *R/methods-ParentOffspringList.R
49e8a1d560524e95994437f6615ddcfb *R/methods-Pedigree.R
0fd3bf464b3d279df9d6d2446ee7d41c *R/methods-PennParam.R
68b329da9893e34099c7d8ad5cb9c940 *R/methods-ShallowSimpleList.R
43db92557e18d87560271475fe0960e9 *R/methods-SummarizedExperiment.R
887ff7e44c9c92217110dfdd297198f2 *R/methods-TrioSet.R
3477c7f32acdf57cd3ac1522959a6ced *R/methods-TrioSetList.R
4aaf9eb49d4c1fa66de033782b23728f *R/methods-ff_array.R
a74b8d60a6232b29a230ab042e080ecb *R/methods-grid.R
6e2564e013a1087d366922ee8cde74f1 *R/methods-list.R
d2ef236c9b8c5a0f7b1bc45251d47a7e *R/methods-matrix.R
1bb2cba0db943cefb5d80db353f24fc2 *R/segment2-methods.R
d6587abc22dfe17723d51d5a2d04006e *R/utils.R
2c7b9151a48e7e08f2774f596a8e9622 *R/zzz.R
303e5458657b5508c000e1c13cb80675 *build/vignette.rds
0e57e8c0ac03566174a91534cd0fff56 *data/md_exp.rda
d1eb803d6c58ff8f8174f739ad7a3699 *data/md_gr.rda
8a3e3917ec140296abace15fe80a7154 *data/trioSetListExample.rda
e1f4dde66e67d1b13d90354b38dcbefd *inst/NEWS.Rd
f290ab380bf24ce270660e24437a912e *inst/doc/MinimumDistance.R
19557bb092451f909640096564255f87 *inst/doc/MinimumDistance.Rnw
54a63c61b8e05efac5182962a6354a89 *inst/doc/MinimumDistance.pdf
e03ea25b8db06926dae3d1aafebd9c33 *inst/extdata/F.txt
efc08f8a945c313599533f15913a337c *inst/extdata/M.txt
95db2e3447bae89e33de8a32f7c27b22 *inst/extdata/O.txt
85bbbd3aa787fd480ae50bb2ffcd8090 *inst/extdata/O1.txt
54e6869d2875b8cd3642e6d6fc185860 *inst/extdata/baf.rda
ffd852d6ef47afc2784d7424175a813b *inst/extdata/exampleFiles.R
002e045dee6803f685d493dcf6940913 *inst/extdata/logRratio.rda
1f4fa7c977cf5e93d1c7a01856de7339 *inst/extdata/md_granges.rds
52ee010584bb394d03f0a8eea59b735a *inst/extdata/mdgr.rds
af6d332ea2ddb50e64beefa03b484777 *inst/extdata/pedigreeInfo.rda
8bb642a23b584fcbaf5fb2f7b7e1bd01 *inst/extdata/pennCNV_MendelianProb.rda
52c879d772258c1e361cf27fc7aeff24 *inst/extdata/sample.sheet.rda
26714615fc7a01e7c93b8d8035ea3f27 *inst/extdata/trioSet12023chr12.rda
8b1703686f0ca0a0e7b3e9e9ff381eaa *inst/scripts/Affy2.R
15ff3c916756840de8888648ce5db0ed *inst/scripts/Discordance.Rnw
de1aeda81e8c8ab6ded25df5ae2dbfab *inst/scripts/Sweave.sty
a099ccea8ee43f05d160bcd257bb7afd *inst/scripts/affy.R
3f33c8b63c426893a035c8f308a28ff5 *inst/scripts/cleft_notParallel.Rnw
7e24f8634a31c17e346eb2286684ad37 *inst/scripts/logR.baf.rda
ba7dfa59e03a85041de313b351b0f3c7 *inst/scripts/runDiscordance.R
e1af4b14d6f30a4e4e0d1c044f671c51 *inst/unitTests/Makefile
68b329da9893e34099c7d8ad5cb9c940 *inst/unitTests/test_FilterParam.R
77e62a5014e356ab9d18448b2c0b384d *inst/unitTests/test_MinDistExperiment.R
f1475ea1d62c4ffd452d99f92cd8350b *inst/unitTests/test_Pedigree-class.R
781a05f56baa5e0dd8ec83790c5df78a *inst/unitTests/test_PedigreeViews.R
77dfc64a92be3f977d0c916f43b20229 *inst/unitTests/test_SnpArrayExperiment.R
e06a2b41fe11be4b705479117744ee1f *inst/unitTests/test_TrioSetList.R
dc3c4b8f7bb58771e718df5fdc795973 *inst/unitTests/test_calculateMindist.R
4540f66b68b46c13b9b426fe03cd204e *inst/unitTests/test_callDenovoSegments.R
4587128861c0c33e9b8214229b5235a2 *inst/unitTests/test_few_markers.R
c3e51589426259ed53a1a0441688468b *inst/unitTests/test_posteriorCalls.R
f5434d8f5bb250791776114ce8fdb246 *inst/unitTests/test_quads.R
68b329da9893e34099c7d8ad5cb9c940 *inst/unitTests/test_rdsViews.R
2d2179773cc4e441499d731ccba69f3c *inst/unitTests/test_splitsForCBS.R
bf12926b420d90f2d532577dc99e577b *man/DNAcopyParam.Rd
2d2b93dd89b207dfbf584e83d7d68aac *man/Defunct.Rd
aeda89b372f70448fe26327463a79c68 *man/Deprecated.Rd
5bcb427e5dd66208a35b2b2f8fe951d2 *man/FilterParamMD-class.Rd
6af71b1ebfda839ab30157b576c66347 *man/FilterParamMD.Rd
02c9084a1263bd1144a9b4d026dd1ab4 *man/MAP.Rd
633c4c8a876be5dd1c083d0c6dfb4678 *man/MAP2.Rd
4395d1f06f05800b9a3c014d90612bcd *man/MDRanges-class.Rd
05a4c73b2d84f619a85dfe83b5d3ebb2 *man/MinDistExperiment-class.Rd
499e860e3217785ffae9a7c4c360395a *man/MinDistExperiment.Rd
d76ba8c58e6b952a222d54606105f800 *man/MinDistGRanges-class.Rd
3314be3e84063cc4b9366bc5e7428282 *man/MinDistGRanges.Rd
e9911c59bc63722826e384e44d5ab3d8 *man/MinDistParam-class.Rd
7d2b146eb7e8038be1e05d8274f9cfa6 *man/MinDistParam.Rd
8bf45b4048005251e959db0ca41aa034 *man/MinDistPosterior-class.Rd
84d8e7e25269300df73896189ab625dd *man/MinimumDistance.Rd
5695e434a346641a49ea1aefa5824594 *man/ParentOffspring-class.Rd
42de0170b591abb29202a3ed7dd44657 *man/ParentOffspringList-class.Rd
4fc0d1fa6d76b5edd1edc7ee403af5d0 *man/Pedigree-class.Rd
d0ce58bf57d0ccccc03506f2bda1dc15 *man/Pedigree.Rd
f07931e27841831d69a0afa57d462f38 *man/PennParam.Rd
187eeb6769ed03d4f687ddb352d00fcd *man/TrioSet-class.Rd
fd43c191647f734f0155854ed115acca *man/TrioSet.Rd
8a32a70fab17911fd9709033c091f5ec *man/TrioSetList-class.Rd
d09eb4ddaa128eb8448e5de9aafd6d03 *man/TrioSetList.Rd
3dd0528cc1c106c896213e943b3a0b8e *man/TrioSetListLD.Rd
b4f364fa7abddf4fcd30d8e8120175ed *man/acf2.Rd
a061810837bcc231d4027f95a587634d *man/calculateMindist.Rd
40041ad7cc38d297c747cb5c04089981 *man/coercion-methods.Rd
824efa9bec9f41385ffda9c8e039f78d *man/denovo.Rd
bb0f631fc09961459245f3f61069fbfc *man/exampleTrioSetList.Rd
9c2189f6d48629f4525ed70cf3093844 *man/filterExperiment.Rd
4a7754d9b4c19514ed470de3a7655bf9 *man/mad2.Rd
061c0c43e05e33a76af38511f4168191 *man/mdLegend.Rd
0d54c0a539e49028a46088167a3b4b3e *man/md_exp.Rd
0e57e9d5fbf87d92c49d9c2d8d4b9947 *man/md_gr.Rd
2b5976976cb9d81f52db4caf5b1fecd5 *man/mindist.Rd
f366e032dedb52a1f3df2ee367509d18 *man/nMAD.Rd
80064b37118103de568ed6ab8a066663 *man/pedigreeGrid.Rd
35b5d60e3efad932de14ba49c6dbb819 *man/pedigreeName.Rd
11db9bacf94bf496cdb6fcae4314dcbc *man/pedigreeViewports.Rd
6e3bff950002c819e8abc0e860556fcf *man/plotDenovo.Rd
5069888b66b32f70041eee349516f9e3 *man/range-ILimit-method.Rd
e10d5abc50d95edffcc9d3393dd93ec1 *man/segment2.Rd
e16d99e01dc0f89641566686d48d0ebc *tests/doRUnit.R
19557bb092451f909640096564255f87 *vignettes/MinimumDistance.Rnw
5fe29a36dbfaa5775155aa15f5f888be *vignettes/MinimumDistance.bib
