f90909451258cb6ca822f7d73f033a86 *ChangeLog
2fd8aed37f4667b9f5c1a0d3b018372e *DESCRIPTION
7fdbc31bc313c831845863659dacf191 *NAMESPACE
20ba6e148ab473373bd8a9316c861dec *NEWS
283e3f9a088763efaa7b86cbc1c41332 *R/annotation.R
8b3ca648dd825defc545bbbee12121a4 *R/graph.R
620cb296481af3a4229fba3a47faa2ff *R/kegg2graph-functions.R
c2e12408775a228fa8b6bb126528cf58 *R/kgmlfile.R
830ca7c286e862a8e816d534df4e30a1 *R/misc.R
09e3d03571a74e7c1c0e8286148528e4 *R/parse.R
1f8138b9f2c917ece8a35280f90731ff *R/vis.R
8c5d5f9e9e3f8996003d8a6a6bcd9e88 *build/vignette.rds
3a7658228b5de23af041acfa073f636c *data/KEGGEdgeSubtype.csv
a1beab1bd09f9ce93eb26b0da00c5575 *data/KEGGEdgeType.csv
842c6eef3e8f4519a696244b3152d807 *data/KEGGNodeType.csv
314ee6349f9ddfc22958deb63f7d6688 *data/KEGGPATHID2NAME.RData
bb5de2fbf342090fac846d28661992f7 *inst/CITATION
df92c44ad325ac89aee1f077d00eaee0 *inst/doc/KEGGgraph.R
efb76f27362967bb7f192ba11c3b161c *inst/doc/KEGGgraph.Rnw
f2ad018b6b4fef43293a57aa9bf8058d *inst/doc/KEGGgraph.pdf
88452f4fd0c245a18261dc53411e45e1 *inst/doc/KEGGgraphApp.R
84ec023be571bf4d342b061eebb9fc01 *inst/doc/KEGGgraphApp.Rnw
10e8fe3811313f95106b3be7c75820b2 *inst/doc/KEGGgraphApp.pdf
03a7b425acc0772a57318f7a99f659ad *inst/extdata/colorectalcancerSPIA.RData
3bb9457e69e4046bc25e31b91e157f16 *inst/extdata/hsa00020.xml
31ec88c8782c5a43dfdd1ca543249cd2 *inst/extdata/hsa00062.xml
685ac46a35c8f2cbf5af5ea55dddd646 *inst/extdata/hsa04010.xml
98db7bd86b62602d13048c44e23b66f4 *inst/extdata/hsa04012.xml
ec85bf9d3a45bfafa9dbb453da80231b *inst/extdata/hsa04110.xml
2a28b18bb170fe0556ee7c7d34900a33 *inst/extdata/hsa04115.xml
1de51f2c134ed139d131fb961f0af99b *inst/extdata/hsa04210.xml
fa5709b4e125ba2ed54b70736682483a *inst/extdata/hsa04310.xml
b8a8ffb3d48dec4fcd378d0055d56742 *inst/extdata/hsa04350.xml
b57861d1bffbbcad9a9d246c0319a76b *inst/extdata/hsa04370.xml
838e298e99839ce8cf3fddfb9585c525 *inst/extdata/hsa04630.xml
c017551fed42e8b7c74d99041af01420 *inst/extdata/hsa05210.xml
9cd758422f5e74420d3629912632f57e *inst/extdata/hsa05212.xml
38daebe22f653e78b99eefd758568f3f *inst/extdata/kgml-ed-toy.xml
d636ff811a6d47669d0ba58e5635a8c0 *inst/extdata/ko00051.xml
b41ccc11b91f3373a4720b03ba4333dc *inst/extdata/map00260.xml
9e6b9bc5d83c036fd6aeca042f035ad9 *man/KEGGEdge-class.Rd
790e3734c708a34c8a8e75adff6e9ce2 *man/KEGGEdgeSubType-class.Rd
e8b8629c3e5226dff91a16d6e76de6ca *man/KEGGEdgeSubtype.Rd
23b6dba2ef5a0ff2994e802f773756ad *man/KEGGEdgeType.Rd
5d2cd58549e82a354304a188fc429095 *man/KEGGGraphics-class.Rd
db6fdcde0c8b03357186316b877cd94d *man/KEGGGroup-class.Rd
f81113e6d73bee877ba8ade09241cb7f *man/KEGGNode-class.Rd
46131dfdd05bbe74ad2259bdbd227a28 *man/KEGGNodeType.Rd
f00e13a090bcce69e81325209511c30b *man/KEGGPATHID2NAME.Rd
3dd8b4b076b21ee27824b6d6f3ff2c3f *man/KEGGPathway-class.Rd
28ebaad837b9c9a76017f62e3b2fcd19 *man/KEGGPathwayInfo-class.Rd
49b9e9883f37f160d00be98b30a82426 *man/KEGGReaction-class.Rd
00bf0131d969f0b479b1f94f9e21f324 *man/KEGGpathway2Graph.Rd
b6261561571f4a634bb26db124c753c6 *man/KEGGpathway2reactionGraph.Rd
4f9db522c13baebe74794538325673f4 *man/expandKEGGNode.Rd
a1298a348777db177229c1824724e5f3 *man/expandKEGGPathway.Rd
07a91dad53e2ca0387ad338a3a9ace4a *man/getDisplayName-methods.Rd
68b871ebe695578d4ee95efd5f6186ed *man/getEntryID-methods.Rd
c0dbf6477ee24e6407aa7750fe81e32f *man/getKEGGID-methods.Rd
15fe2ea726bb0b803ea8a6044ba3ff1c *man/getKEGGgeneLink-methods.Rd
746d6c832f4880217e2755c0dda0478f *man/getKEGGnodeData.Rd
d393610c12c5c030f5e56bea5fcd6b35 *man/getKGMLurl.Rd
c2442b8b6dec40addfa60e053934e7c8 *man/getName-methods.Rd
d4440b8a63c7060427f1127e36aecab5 *man/getNamedElement.Rd
d43248cb129ce5ae1f1cb30e06953c2d *man/getPathwayInfo-methods.Rd
999c926bdf68de3eb93a8126092ef3aa *man/getReactions-methods.Rd
f65ccd8edbd055d6a6540cf77ae04937 *man/getRgraphvizEdgeNames.Rd
ee716f92402295a1df1d6a200f1f538f *man/getSubtype-methods.Rd
27dec51bcfb9509cd61660c492717375 *man/getTitle-methods.Rd
629b8f1621638fe1609913bddf841b41 *man/getType-methods.Rd
f75877c67ca593c897ca93c608e928ca *man/getValue-methods.Rd
cb6b743bba88bba3e8db6f20acfb2cbc *man/graphDensity.Rd
07f14e164a8099aa0fa2f0be77bf1870 *man/isHomoList.Rd
a32d3b276be754dac6d0e6e9542c8cde *man/kgmlFileName2PathwayName.Rd
78713fbf43625c701428b26f92842187 *man/mergeGraphs.Rd
3876a6e625e97bbfcf9e553a50036a6a *man/mergeKEGGgraphs.Rd
ce0482b42735a9414bd73678ca2af252 *man/neighborhood.Rd
4f3134b1bb627cdc609f7c41f4f83ba5 *man/parseEntry.Rd
b8ca7cb35139dcff9e4074d478a2bf29 *man/parseGraphics.Rd
109225ab529205967190a26e7badd823 *man/parseKGML.Rd
164e2d08c4d5e03061d5fb0b23f4cd8f *man/parseKGML2DataFrame.Rd
86c9b34bf53cf275d257dbfd04a453e5 *man/parseKGML2Graph.Rd
d632357b0256f0323f8c6a4ab01e52ed *man/parseKGMLexpandMaps.Rd
4ab4344eb76aef0e8e0538e30f96a13b *man/parsePathwayInfo.Rd
647efe72f0c665ec47b924b1e65a5ba4 *man/parseReaction.Rd
d94fc9264ebc5a6725e355f3652fc98e *man/parseRelation.Rd
a50ebb9cba9a4759304a16a28542eb5b *man/parseSubType.Rd
897bc54e357c023015317b17387e1c6c *man/plotKEGGgraph.Rd
f92146b62837551f21e5b028412c6d79 *man/pvalue2asterisk.Rd
7e3d0dcb9c838224206cbe0b36a516af *man/queryKEGGsubgraph.Rd
321629ea78ebbe10078711ef6a401c5d *man/randomSubGraph.Rd
330b115453795d0c2595d2ed04b58ff4 *man/splitKEGGgroup.Rd
19d7e05435f485bec2b10506ba443a13 *man/subGraphByNodeType.Rd
aef297f4f2aea9cfcbd9a1020164cda6 *man/subKEGGgraph.Rd
be8f9cda047cbc410d48961f6dda7e04 *man/subtypeDisplay-methods.Rd
08066f1aa02e5860d9da7f1386b5765c *man/top.Rd
8f1172392a61549ec0d056ea0eda1d72 *man/translateKEGGID2GeneID.Rd
7bc197b9711871b5f105a360e4e198d5 *man/translateKEGGgraph.Rd
569f120c59b5bba0b662a82eee775e18 *tests/kegg2graph.R
679c28b439bedeaa320382b6c32453d3 *tests/testthat.R
1e7028b9c3dcdd42ce87f164022e0ebb *tests/testthat/testGraph.R
1fd6e6dbc5a08c0c21a88440e0574bce *tests/testthat/test_KEGGgraph.R
d148fc9654172c037aee965d2e6c56c7 *tests/testthat/test_reactionsAsDataFrame.R
efb76f27362967bb7f192ba11c3b161c *vignettes/KEGGgraph.Rnw
84ec023be571bf4d342b061eebb9fc01 *vignettes/KEGGgraphApp.Rnw
