1ad634938ca1e669033b144cdbcb8b72 *DESCRIPTION
d5820260229c26750bc4aa3536abc7cd *INSTALL
002dafcdcdfbc399b35381cf9ef18a28 *NAMESPACE
e7e1050e3a41ba62b9b982c9fadecd77 *NEWS
10e8c2506b3d67cc31b8012fd40c7cb8 *R/RcppExports.R
c98289fcba6b740d3647df9912a43e41 *R/class.R
50862da8615b458b5641bfa113886bef *R/hilda_diagnosis.R
d8070c5f739250b0f3aefd7c7fd42892 *R/hilda_plot.R
23ba15629eaf858ed9c583bbc128b9d7 *R/hilda_test.R
f03aa6d4081596db9d470f052ca9396f *R/pm_getSignature.R
68f66ad16e1c7d06d9caad9746ff94ff *R/pm_plot.R
649be2520c449561d2ff6b16b1b6122c *R/read_file.R
5cac33c45ea25661cd07fa8a29281bfd *R/vis_signature.R
d3ac7cb18d089017835f0b7b5f71f00c *README.md
6b7b0f8cb56bd4dbed389e2f914ce3a9 *build/vignette.rds
39408e2b17ce8c2c8ed9d9d9b0007389 *inst/CITATION
5e68cad6fb1b5c79115788c9305e429f *inst/JAGSModel
299d9406bd6605f9f14cc405a7927ecd *inst/doc/HiLDA.R
9b7d3e9a2a949391c133d3387be14fa4 *inst/doc/HiLDA.Rmd
a0125fe3a3919264545bcce95d8d8fac *inst/doc/HiLDA.html
989a451bb30c1ad60ea6b18941ad65f5 *inst/extdata/esophageal.mp.txt.gz
70c124fa456722f9554eab202fa57487 *inst/extdata/hildaLocal.rdata
e5e586e6427e01dde7f8cfd000e78ab9 *inst/extdata/sample.rdata
8d283f570c6d8b8d03201667b934db5b *inst/global.txt
618abfbb00f7a8a4f6403d50ffd6d7af *inst/global_tr.txt
1fdde9f717151ef0985d607d6f9a4934 *inst/local.txt
dd283481fe205953a3d8bfe4c984aba7 *inst/local_tr.txt
3d400c78a4e3c27d2263eb16ef3a6255 *inst/script/INFORMATION
2ff393f03533dd696e85f2982dfbc2be *inst/script/use_esophageal.R
af151c1feff70e457da17bb618f33712 *inst/script/use_hildaLocal.R
0500b582bc56fcc0a1ff906590149563 *inst/script/use_sampledata.R
de5f443d4d31570079454e3ae8db6e0f *man/EstimatedParameters-class.Rd
759c7ae2e5648952851c9579b669504b *man/MetaInformation-class.Rd
08fa2c16121405c9bce0d8958f02c1bd *man/MutationFeatureData-class.Rd
ed8d353e7e1b74a0531b0e33e2acd2db *man/PMSboundary.Rd
f467a699942160e3fef0d3046ed73a52 *man/boundaryTurbo_F.Rd
d354b9357d699686d2310deddcb252ef *man/boundaryTurbo_Q.Rd
adfa1ef3c0cdf19f2b5f199090400f36 *man/calcPMSLikelihood.Rd
5f11aba10077a46ce8871c23bf410f4e *man/convertFromTurbo_F.Rd
1b35032b144ceddaef9a73db4af645a8 *man/convertFromTurbo_Q.Rd
482491809379d17529db9c9ac70d1e27 *man/convertToTurbo_F.Rd
3767454906da7e844a2c516b74a1179a *man/convertToTurbo_Q.Rd
e3368b5c2892e0efd0d916b0c53c6527 *man/getLogLikelihoodC.Rd
d3cb67455c30dc9442bf654ac22ebb2c *man/getMutationFeatureVector.Rd
e660f8d67914aa3d014d50fc02c9c300 *man/hildaBarplot.Rd
499039843f53acbab6e33653ea2c8971 *man/hildaDiffPlot.Rd
610104f1e61d5e98dd7b4addc1e2301d *man/hildaGlobalResult.Rd
85a5bc47d5b1d8d8e0ecbc1fc59b1774 *man/hildaLocalResult.Rd
e6f745c1649c71275756987369c14e7b *man/hildaPlotSignature.Rd
0476c0f31fe05c3b81fd15dc48b0ad36 *man/hildaReadMPFile.Rd
be368eb92149bd78034b8f5ee52e2399 *man/hildaRhat.Rd
5fd893a78f47a9771732703bb88dd0fb *man/hildaTest.Rd
e1a011521ba914b7702f303e4144e5db *man/mySquareEM.Rd
75121037209689f415f1dc21579c9bc7 *man/pmBarplot.Rd
64e4e830769d64036fced96521a85155 *man/pmMultiBarplot.Rd
276fcfbf84add77d90dcfc7c617e427d *man/pmPlotSignature.Rd
1a6751bb76072ddc6cf3c293c4062e15 *man/pmgetSignature.Rd
e0e8f91043a1af2323b8a9956c50020a *man/updateMstepFQC.Rd
43999ce0f15ab970d99cefd0605cf677 *man/updatePMSParam.Rd
b5c9d590f53e6128a8d9c246ed81727e *man/updateTheta_NormalizedC.Rd
67872c480f61728325b53bd62ad032e8 *man/visPMS.Rd
2919bbdeacf226f5e17bd124d733edda *src/EMalgorithm.cpp
0f3d79a5f004e5ca4a691c0703b4e447 *src/RcppExports.cpp
61d3458eebb3efee412bb62e30e17dbc *src/checkBoundary.cpp
31cd7f49cc1e8e11cef56259139c0e43 *src/convertFromToVector.cpp
6383d84a9f3c2439327061c899976361 *tests/testthat.R
25defa14363dd159976e42afd4c0f7f7 *tests/testthat/test_hilda.R
9b7d3e9a2a949391c133d3387be14fa4 *vignettes/HiLDA.Rmd
