14106d536dd73104b43b7dcbbc12cb8d *DESCRIPTION
8220a45d818790db23e26c1f362a385a *LICENSE
7bc0cf96e5ed0afcc4ecc03e89aac225 *NAMESPACE
6945e8b92f6cf91a9c90a8d03807321d *NEWS
1bb025ca8110a6912924f2dd28f40106 *R/BrickContainer_functions.R
6a8e098688eb941128b934e5c8abbc34 *R/Brick_functions.R
e5a71724bdb5472a2a614f1e42203de3 *R/Configuration_functions.R
bdd0ee4b63a6c65e10b43d84a1890008 *R/LSD_functions.R
43c19404dc316acab9b8e33384125c5a *R/S4_functions.R
28897e16480bdd2b4ff078a3f3500e10 *R/backend_functions.R
5b35e8dcb128d8921ec2f682f481f163 *R/backend_utilities.R
d8b1b4ce02f290ca74b0583f534d818b *R/bintable_functions.R
0a4c5b0b80b1ca4a5609bec9d4c7ccb1 *R/cooler_loader_v2.R
5338be527bfe33984e511641be8dc8bd *R/export_functions.R
762685b8fe3af0f2f111801786d46cd4 *R/hdf_functions.R
95ad5b47e4945cf35c3733008880c9a6 *R/parallel_utilities.R
af363c16b2e25f6fd7134aa8a9b84bdd *R/ranges_utilities.R
f7257978d2f61a1edef6068028221ad9 *R/table_loader_v2.R
89903953bf3dc7cf2897de3185c48a8a *R/viz_art_backend.R
de6a13c7461a8d045706e5b0715d7dc9 *R/viz_art_functions.R
554da914fe3c9edff28add97f711f255 *build/vignette.rds
f914b36d48a821ead2e5ac3ca131af4d *inst/CITATION
8abddfbab1cbfd37e567ee7c02b4d135 *inst/doc/IntroductionToHiCBricks.R
c80069ff72f2176a44b334ab89104442 *inst/doc/IntroductionToHiCBricks.html
1c6997d5625931278676b948c57b602a *inst/doc/IntroductionToHiCBricks.rmd
9557946fd865bb5051303e3cc340b129 *inst/extdata/Bintable_100kb.bins
3bbed815a92c3444da8fea850012dedb *inst/extdata/Sexton2012_yaffetanay_CisTrans_100000_corrected_chr2L.txt.gz
f6ec1176f037fe5d7042af384cfcafd8 *inst/extdata/Sexton2012_yaffetanay_CisTrans_100000_corrected_chr2R.txt.gz
f20848fb6a54008fd6cb15ebc79041d8 *inst/extdata/Sexton2012_yaffetanay_CisTrans_100000_corrected_chr3L.txt.gz
ee6e6247cde91eec04819902f806ad8e *inst/extdata/Sexton2012_yaffetanay_CisTrans_100000_corrected_chr3R.txt.gz
c054bf21cea63e97f7db7af45ce61eae *inst/extdata/Sexton2012_yaffetanay_CisTrans_100000_corrected_chrX.txt.gz
be37db832b4a716a5aec2b2eddea2603 *man/BrickContainer_change_experiment_name.Rd
1b89eedf75c97bc701a18545dfdc90b1 *man/BrickContainer_change_output_directory.Rd
13a115847e587da443fe9edafffc83c3 *man/BrickContainer_get_path_to_file.Rd
68554f32434c3ea537249e5a8c4d106d *man/BrickContainer_list_chromosomes.Rd
c1ad9e4b50d30def71c0d913e838f496 *man/BrickContainer_list_experiment_name.Rd
1b5d23b6072a5827a9694dc4fe7364f8 *man/BrickContainer_list_files.Rd
9f53b7535cf06dd19de640adf158f8b6 *man/BrickContainer_list_output_directory.Rd
de3992af29c9a9fab34aa5bb9338c3f5 *man/BrickContainer_list_resolutions.Rd
5fb46964aa898f2f558fd0b8ec919917 *man/BrickContainer_unlink_resolution.Rd
ec4eeb78d674b7363b89613453e5ae82 *man/Brick_add_ranges.Rd
77e74b17ce6ff124dad7a34e60092054 *man/Brick_call_compartments.Rd
aad57c5e9a9c7b45547f1d6b2a491c30 *man/Brick_export_to_sparse.Rd
8dacac0f27230b6927ac243a0b4bdd20 *man/Brick_fetch_range_index.Rd
7b80db346adde7f788d8e7fa11575c57 *man/Brick_fetch_row_vector.Rd
693ff5a9010c597fe9d477fd455700ff *man/Brick_get_bintable.Rd
c73ea7caca00b22967676a4a1e9518bd *man/Brick_get_chrominfo.Rd
58e67168b36f408ba50b5e10b05462b1 *man/Brick_get_entire_matrix.Rd
89dada5e584cbe2ed0fa608ba334eaed *man/Brick_get_matrix.Rd
abde2338e1bd4b82541ec470867d28df *man/Brick_get_matrix_mcols.Rd
bd264ef84c8db5dd9d5e55a7367af512 *man/Brick_get_matrix_within_coords.Rd
fe77792d694c9f0102bbd7c3083285d7 *man/Brick_get_ranges.Rd
35fe13cc23e9838f8d3f610f879db8d5 *man/Brick_get_values_by_distance.Rd
53a3f8db7523b12eac7fccb6d71ffbb1 *man/Brick_get_vector_values.Rd
abcadbb3991ad8ce8e316b95301c5f08 *man/Brick_list_matrices.Rd
3234c44eece34cc4d56f66e8c97199fc *man/Brick_list_matrix_mcols.Rd
4cf6a745be57471b7c70cf80ccd42762 *man/Brick_list_mcool_normalisations.Rd
09680233f2044893f5c0fb76b541702f *man/Brick_list_mcool_resolutions.Rd
fd51a0f64b254db410813afc9d3ad60b *man/Brick_list_rangekeys.Rd
bcc01ba292defffe3b375dbcacddf1d5 *man/Brick_list_ranges_mcols.Rd
04a51d02086e503856c6fe946a9695c3 *man/Brick_load_cis_matrix_till_distance.Rd
c9b6fe3390a02a89c16bdc3bdc4347a3 *man/Brick_load_data_from_mcool.Rd
81b57d8e3875ad7f76842686cf493543 *man/Brick_load_data_from_sparse.Rd
472ee6103aa55c6181056a810c9bda8c *man/Brick_load_matrix.Rd
11ff1683973b259c4c7a865ed8a3db14 *man/Brick_local_score_differentiator.Rd
3375a9ba46bb17ae5827d9b7009eb6c9 *man/Brick_make_ranges.Rd
25cd41c0b1d822b0ed5f483e0fefcf56 *man/Brick_matrix_dimensions.Rd
b4b8f77457ab3e3be1ebf2f182bcdae1 *man/Brick_matrix_exists.Rd
795bf65c0e8251269d50d72de0193e17 *man/Brick_matrix_filename.Rd
1c0703a08921574bb3bbbd0411ddb28f *man/Brick_matrix_isdone.Rd
2a57ebbdfb7695fd84fdf6fdbef168d2 *man/Brick_matrix_issparse.Rd
4299afd40dec322b7ca20ecd30312ac3 *man/Brick_matrix_maxdist.Rd
64650d6255e5bfd9e7e1e19f778d62d6 *man/Brick_matrix_minmax.Rd
5f2e6fe2bc2d11eac589447bd5cfd74c *man/Brick_mcool_normalisation_exists.Rd
6ee77e5d076909e1adcdb5b819bc033e *man/Brick_rangekey_exists.Rd
f72bff4aeb0b4292f51fc709918c6b8d *man/Brick_return_region_position.Rd
fa6ebe5d35fe1a9d206c0c53110274e2 *man/Brick_vizart_plot_heatmap.Rd
bb5bfba5c8591a48f138590a30476764 *man/Create_many_Bricks.Rd
b0ff406190cdfb3cdc3fedd1890db633 *man/Create_many_Bricks_from_mcool.Rd
14dc3f98ccf4ea8b5dc50e85ebc9af6a *man/HiCBricks.rd
a9435ddaaeea3182f761c9f434442e28 *man/load_BrickContainer.Rd
1c6997d5625931278676b948c57b602a *vignettes/IntroductionToHiCBricks.rmd
eb976987fb2452f88099f48fa798c663 *vignettes/custom.css
