3eb0206f39b177970d168f8747d64c04 *DESCRIPTION
94d867c7f0f6aaac9c89268cb0e5f49c *NAMESPACE
81eb4b01e0d5fba08117baf1c3a86b55 *NEWS.md
1e14b0824eb7831d177ac73e7fcbda07 *R/DataClasses.R
99e85eca5d9d927438ec6fa84e9e0bd0 *R/GRN.R
f08a2dd4251c9e028cdfb78bc4d03810 *R/core.R
c2071a287eb516bb08ed2958538afb59 *R/diffTF_sharedFunctions.R
6b25b2f3582e54be9ef9f32d15dd2330 *R/helperFunctions.R
b3adc722cee303fb614ae3166eb14864 *R/network.R
83981b84332b61ce3c9eff017883b9d1 *R/plot.R
c57d6142adee2e1d1e1765e236437691 *R/zzz.R
2cf793b553610e1c846e8b69f728a5a2 *README.md
d0bfa83b207d3dcd712d784075b84915 *build/vignette.rds
08c9ff285a2e68f2d117b2d38a249937 *inst/doc/GRaNIE_packageDetails.R
8bbb1fd0ad6ae5bf6aa495b049ddfb44 *inst/doc/GRaNIE_packageDetails.Rmd
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74ad92756ced760dbb274ed46b859212 *inst/doc/GRaNIE_singleCell_eGRNs.R
07bc28e38fa0dc508ec9fbe904b8422a *inst/doc/GRaNIE_singleCell_eGRNs.Rmd
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9849d1798cb580eab75be6b6d215243c *man-roxygen/GRN.R
c4993708a72fc778c7d3f12e187a9797 *man-roxygen/TF_peak.connectionTypes.R
2c2c922fa8eef72e6d0c9f57fd6b2c2e *man-roxygen/addRobustRegression.R
1ecac24bafab4847e8592f442d94f1e0 *man-roxygen/background.R
1df0e194263c3f1bcf2b7933ec7454d6 *man-roxygen/basenameOutput.R
cc366f9a506116d611bebb8dc5d00cc4 *man-roxygen/communities.R
0c876f9f1d050d4fa308205ab995ce34 *man-roxygen/corMethod.R
1296a0141e4dfdeaaddc2ea8d9b243ac *man-roxygen/forceRerun.R
83ab0f1ca17b6af20c16fc2302a6924e *man-roxygen/gene.types.R
c63953a7439ec2b6681f782dae4fb050 *man-roxygen/maxWidth_nchar_plot.R
fb7e66105de8ba388bdb7157a441c32a *man-roxygen/nCores.R
03ecc3512c24f1257d8507f041a6d14b *man-roxygen/name_TFActivity.R
f2757fa2414ea71f48b7791677adc68b *man-roxygen/normalization.R
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c680647609e2a89380139f1e34a482c4 *man-roxygen/plotDetails.R
a0c55f73190f1cc076e84caf5753bcee *man-roxygen/plotDiagnosticPlots.R
34425c685c007614d5fba5b99b9d975d *man/AR_classification_wrapper.Rd
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31d6f496d229c11eeb2086091c87fb7b *man/GRaNIE.Rd
5aa299dd4207cdf2e5551919b87d4280 *man/addConnections_TF_peak.Rd
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5ce29b86447bc3767d97e785c9933f65 *man/add_TF_gene_correlation.Rd
1b9583969dcc97b9fe9b414b234a0f74 *man/add_featureVariation.Rd
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3a781c670666f9c2e7247d22768ed950 *man/calculateCommunitiesEnrichment.Rd
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2dd123ddb64bcf4662a01eb23ca3e0c2 *man/calculateGeneralEnrichment.Rd
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39ac04e1b3a7ab866a4e60f4e5f5c065 *man/deleteIntermediateData.Rd
c9df80e896ed284877514bb9d77e2426 *man/filterConnectionsForPlotting.Rd
ec9f45ed291a671b31e33de8b28e791b *man/filterData.Rd
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30cd5ddfabdad58cb379b3c5051af10e *man/generateStatsSummary.Rd
cf4b147378845fdd655869c83f1a7a99 *man/getCounts.Rd
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37bca686c3c085fb2d665fd5ef622fec *man/nGenes.Rd
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756a5a8b20f8eebe1df4409e69eb8ae5 *man/overlapPeaksAndTFBS.Rd
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d0e2bfdd12bb29e9eebed991fc133c65 *man/plotCommunitiesEnrichment.Rd
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cdc2c9cf4a26767cf3f2b7afc5aa8539 *man/plotCorrelations.Rd
ebc5263bf8ea4b62ff90f608f1eb6aa3 *man/plotDiagnosticPlots_TFPeaks.Rd
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8f4cb0d0e9448a8930afe99c4e49301e *man/plotGeneralEnrichment.Rd
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cf420529e8c521644aa308156ed9450a *man/plotTFEnrichment.Rd
ffc433380816351ab190540426958229 *man/plot_stats_connectionSummary.Rd
8f0ae52a43f11777f6553597f3330640 *man/visualizeGRN.Rd
8bbb1fd0ad6ae5bf6aa495b049ddfb44 *vignettes/GRaNIE_packageDetails.Rmd
07bc28e38fa0dc508ec9fbe904b8422a *vignettes/GRaNIE_singleCell_eGRNs.Rmd
d78502d69bcda02d631fdf662789a033 *vignettes/GRaNIE_workflow.Rmd
f18053b62131630d25147af6b3d36bb7 *vignettes/custom.css
