c964eca873c09fcddce8a6b03e9893f5 *DESCRIPTION
ea3a927857b16a7038ce7aff5bcc1a84 *NAMESPACE
057ffa1ed40a15e13aecd38480f94094 *NEWS
85cc930b85d6493db08e16e955dda8b4 *R/0_FGNet_GUI.R
c9a4fed3d48b676dc0b034d0ae993ba1 *R/0_FGNet_report.R
16b5e2098f3949859e66dc5d9f72e921 *R/1a_fea_david.R
5c565c006888c2465a6b3067071bff50 *R/1a_fea_gage.R
3b54a3b10107b8a74bf45a241123b784 *R/1a_fea_gtLinker.R
1f4a36d33c190f7c48addf3bf323574a *R/1a_fea_gtLinker_getResults.R
314673f3d4c9111d42c3d3106a7eff79 *R/1a_fea_topGO.R
c7ec32124ae14f13119e6ae41f717c5e *R/1b_format_david.R
679e32fc00f51ec603ab9bb497ee56cc *R/1b_format_feaResults.R
df668fbb7006bb0b28f12cd8543753ee *R/1c_readGeneTermSets.R
dc237151284cb49187a4deb24f9942d8 *R/2_fea2incidMat.R
0b2c8baf023c9327ccaec02ebad8a061 *R/3_analyzeNetwork.R
f5f54bad10333e347aa609d2265a8fcb *R/3_clustersDistance.R
102633f5fffbae820d415883299819ae *R/3_functionalNetwork.R
041720a046c54ac870572e9bc0590a37 *R/GUI_auxFunctions.R
b27fb307844a6fd8b8a2b6b0c5a1c66d *R/GUI_tabFEA.R
41bc9f1b3e5141b01305215d608eef8f *R/GUI_tabFEA_tabDavid.R
6de5d3717f5ac0322907d4f91a08a4f7 *R/GUI_tabFEA_tabGage.R
ce2f27fd5ab07ea54cad7385f504c459 *R/GUI_tabFEA_tabGtLinker.R
0ee90a4a85f9b6756ffe8cfb825bf7a6 *R/GUI_tabFEA_tabOther.R
0bd758db53d0ffbbd9dabd4227a12d4a *R/GUI_tabFEA_tabTopGO.R
f2dc6a9c2ae25b3dd8e851ce0dc5275e *R/GUI_tabHelp.R
5495ae5173dcc332ed2f31da55d371d0 *R/GUI_tabNetwork.R
455517d68e2b0e214a28103cc18830f4 *R/GUI_tabNetwork_common.R
755507ec76508ab09625584c9ac11eeb *R/GUI_tabNetwork_tabOnlyNw.R
39438f0e6fcec505d002d8fef289b830 *R/GUI_tabNetwork_tabReport.R
84acb95de2b47963c37a45f89c02bc09 *R/GUI_tabNetwork_tabSubNw.R
8c4be397034b1be6f7b881fa129f4a1c *R/getTerms.R
820d7517eb8a54c8668b386429f785b6 *R/keyWordsTerm.R
15a7a361056db10ac5cc26c599ed5ee3 *R/plotGoAncestors.R
e32f505f135ce1d52505fcd2696cd496 *R/plotSubNetwork.R
c4829e395c4fabf92d4c22948a23afce *R/private_SOAPquery.R
a215112b1f38b0acda3b967448b16ca7 *R/private_addGeneLabels.R
def27cc9014c171d6da8f9f7051521d1 *R/private_buildGeneSets.R
bed5baabdb7790b49514c48f69c53a28 *R/private_clustersTable.R
a4a92c9b89a0cd1c8728ed8e049c848a *R/private_createHTML_FEA_header.R
be8f4f41629f3680d39ca34bb13f749d *R/private_createHtml.R
6909d77f5bba922f7c1514847cbd1f58 *R/private_getJobName.R
058267cddaf11c374c0fa23411d8bc66 *R/private_getMGTerms.R
a345ace7c6d2c6893ffe76c524a61b11 *R/private_loadInstPkg.R
ab5d51cb5304c029ebf11a1ccf400a1e *R/private_plotFGNet.R
2b77d7de8e4c372e610e4115237854f8 *R/private_plotFGNet_bipartite.R
e91310b4745032d0f7efb7d1fcf7cd53 *R/private_plotFGNet_default.R
e66a95c2ca6e2dd601bf25445d8e7ed0 *R/private_queryArgsAsCharacter.R
2cca473cdf88d23170faeb4714fab1e9 *R/private_setColors.R
0ad4147a6f587310f0dbc5821be786c6 *build/vignette.rds
033c02a23fb66e7763ba4ef32e8d4ab8 *data/FEA_tools.RData
1a62b91b99c9d82b07a6761e257064d6 *data/GOEvidenceCodes.RData
63e1c96fa4e8f4df7832652e762a041b *data/datalist
ee9a7193c027ad14c26d56b980600f29 *data/groupTypes.RData
b70e7fe3289d17e9e545fd150c9afe8f *data/organisms.RData
53b7ed10999b73da9b05d20a82f5f28a *inst/CITATION
35dcec9e99231102cff297b0ef6e5998 *inst/css/functionalNetworks.css
078ded12f3f08e6c944c76e376d4b5b7 *inst/doc/FGNet.R
5417f070d1dc103b8b448fa0ac1a11cc *inst/doc/FGNet.Rmd
e19a846bf5f4eaf8d8966e445ccff02b *inst/doc/FGNet.html
85f39f175ec21a95a44a27786e27fe1d *inst/examples/DAVID_Yeast_overl6_raw.txt
f84f73bf77100b9dfad248aa7c1fb02a *inst/examples/DAVID_Yeast_raw.txt
41da649f517b041dbb1f8e992c7834fb *inst/unitTests/test_getResults_david.R
fb68c292d0f098de995ca62ec59508e2 *inst/unitTests/test_getResults_gtLinker.R
fa928776c780fb155a1743c297a515f9 *man/FGNet-package.Rd
61a948452e21a10a3dd98e4734480958 *man/FGNet_GUI.Rd
a5129fef5e267004cb42a7df0f6c02b0 *man/FGNet_report.Rd
ff892a27451bb204cd1975259b28a00c *man/analyzeNetwork.Rd
dce592ce479a7b6c000cfa7624d2cc1d *man/clustersDistance.Rd
a5c6c0c9c786c8e7cf6ceebb82329e31 *man/data.Rd
d6cbcb9d4aea700a4b969c181255eb36 *man/fea2incidMat.Rd
f43dccee72be91548b6861717baff3c0 *man/fea_gage.Rd
91dbdb3e69dc2bc373c5fb121868bdf2 *man/fea_gtLinker.Rd
bf19ede1b01cf677c209dab7d64c462d *man/fea_topGO.Rd
d076cc3606746e4b669f97d8468fd86a *man/format_david.Rd
d41d5008540083ce02a891fb7fc72403 *man/format_results.Rd
3eff6d14b7d49f3f626c4dc90f353dbc *man/functionalNetwork.Rd
78ac6b1f7bea8a43b3758556d0b7a622 *man/getTerms.Rd
c989187267942d7c8fba9f5668075667 *man/keywordsTerm.Rd
e7e0a051eb84dd7ec8b859aef15d8ae3 *man/plotGoAncestors.Rd
995ff956bd51e4e3553e4012d938c231 *man/readGeneTermSets.Rd
a5c510e52a9e4afe04a1208a853028b8 *tests/runTests.R
5417f070d1dc103b8b448fa0ac1a11cc *vignettes/FGNet.Rmd
210a2ec2257123a9a12878ebfe04d95e *vignettes/FGNet_GUI.png
c2f5b020f55c3a2e53fd545a342daac8 *vignettes/FGNet_workflow.png
2bf8018f88e12ad08f89589239d8ec3d *vignettes/TermsYeast.png
e4d4c32048d3960f42aacac05f3ee98a *vignettes/hsa05010_Alzheimer_disease.png
99ab09a0f4fb7a8cf242976ded4e5f24 *vignettes/nwExample1.png
e41cfe313f6ff467fbae5c84b1239a13 *vignettes/nwExample2.png
8097f7b6823c90b3c36474cf66e59160 *vignettes/nwExample3.png
6a62a640c4aa7605c330bc4cf314c324 *vignettes/ssDavid.png
f104366d45104fbf9491c8d7d894e50d *vignettes/ssGtlinker.png
