3443a1ad43b4f17dcc79a133d0294768 *DESCRIPTION
90564e8b256f0043a8195777ffe659c5 *NAMESPACE
b62a35247de9247065a351f34d44f6c1 *NEWS
b3fb5c3ff86c6e07b55f861f5a70a553 *R/RcppExports.R
03f27f4b8392ac1c3e217407c86ec02c *R/core.R
1906b0246889207bebc1c267be289511 *R/encodeSeqShape.R
c2136e31f10acba139715cd701f52a59 *R/getFasta.R
dd281ffc8faea3df94973cba09e8f433 *R/getShape.R
728be9348a70e301c592a554c556cdf7 *R/plotShape.R
83562ec79a90598fba7c0fa88f928a2d *README.md
632905288e5a77a1a1eb67f06e1424a9 *build/vignette.rds
1aa30a7166f51ae7589b59ed38d82dbb *inst/CITATION
e5475188a145acc9fa8ef904666aa15a *inst/doc/DNAshapeR.R
92efba75eebd3a2cd02ffa47a36defdd *inst/doc/DNAshapeR.Rmd
47257a3d2306a49c2f1b1294233c424c *inst/doc/DNAshapeR.html
efd657fa657b310a6c213be8a6a1738a *inst/extdata/CGRsample.fa
a9267e4fa2cc9acc77a35a34961232d2 *inst/extdata/CGRsample_short.fa
160980739c1493dbbd1a4586224cd556 *inst/extdata/MethylSample.fa
7a6bb9e5cf9f035bb53d49e17464c77a *inst/extdata/MethylSamplePos.fa
a8cf5c1d9b14ad22be851375c530308d *inst/extdata/PBMsample.fa
79a89233d6ddf281511f9aefa00f93c1 *inst/extdata/PBMsample.s
4bc368a0e4f25e1fad2046af524dfa82 *inst/extdata/PBMsample_short.fa
83d99c3ad65064352b113141c9205e05 *inst/extdata/PBMsample_short.s
7453925541847cbda125df442d72e67b *inst/extdata/SELEXsample.fa
3c400a17e2b6764661640f8406906c45 *inst/extdata/SELEXsample.s
6583029d77c5b5281bc4d9faf654f991 *inst/extdata/SELEXsample_short.fa
0af639efe7353369e2aafbda2bf295ef *inst/extdata/SELEXsample_short.s
154cc12c51012ac4ebd424a8bf8e3775 *inst/extdata/SingleSeqsample.fa
05229034b2da79b3be5345c85513094e *inst/extdata/SingleSeqsample.fa.MGW
be4ffb0364e8258f0ca3f515d4200562 *man/DNAshapeR-package.Rd
e48091a96ccc4666373a647f74684deb *man/convertMethFile.Rd
9ec0fad71d98586ea202621abc19bb15 *man/encodeKMerSeq.Rd
c44bccdc870778789cee8485219bbf1e *man/encodeKmerHbond.Rd
e12ea17a7626ee26aa626755d4ac6e8a *man/encodeNstOrderShape.Rd
248433029d432c11b98f1e6b4eacd4a2 *man/encodeSeqShape.Rd
34e7e905e5ea790131f5df7ee38d18b6 *man/getFasta.Rd
bd4715af2c735604c5cfaf265ba79d8f *man/getShape.Rd
2eda4c6cfea773d89ae870d7945352be *man/heatShape.Rd
5753f0354ce758f3f98ba8d84c1b5e2f *man/normalize.Rd
25cda228d7bfaa77367c40f33c7d88f9 *man/normalizeShape.Rd
71e385e3202aa80a6f3e15c96c35dd8f *man/plotShape.Rd
344d8ddd958903a90345a7383254d607 *man/readNonStandardFastaFile.Rd
12a4933ab03924b4d65101b6736f53a1 *man/readShape.Rd
98500ddbd08e2dd1737fb9cf9bedcc69 *man/trackShape.Rd
823940f416b8e38ba37337079b545589 *src/OptionParser.cpp
cabf5f2115910179257a7ba3726dc352 *src/OptionParser.h
64427211954120de9a78a799349e271e *src/Output.cpp
30b55db3d81d11aaca8835d79d87dc82 *src/Output.h
a86389ca650c67c152e9a444d09b0679 *src/RcppExports.cpp
8996c3db480df55cbaf38f3dd370b13a *src/ReadData.cpp
47d6cfb3d3c3fbb20f0fe20da7fc4707 *src/ReadData.h
895e9a14b11dc0c44a02bec2166fcfa6 *src/SNP.cpp
32a2f8c3931664af2ba83cfff529176f *src/SNP.h
aa3a67e08ee69c0d9f5ee36f7bb350a6 *src/ShapePrediction.cpp
5fe995f13d8ec61cc21f94ac1b87a13e *src/TableCompiler.cpp
dbc0e4c1f490a998e06fa7cc2551c1d5 *src/TableCompiler.h
3230d9f9e962a648180433316493f897 *src/common.h
60ae353d20ce982ff63ca4b99b1a09d6 *src/map.cpp
fb4c3e53d4479d82a08beb852d139b05 *src/map.h
596b6a828e6b583c9c3f2fd0ca56fede *src/prediction.cpp
686f5d7ce7ffab6bf8f1318704f3e1c0 *src/prediction.h
57771336506686a7d010c3f66d44e946 *src/properties.cpp
ef9d75d9f98f09b4f340b111ae055858 *src/properties.h
2518b6181b0fd06a455aaccb5cf5abd3 *src/utilities.cpp
0cc3279d7dfbdf0761790c6560a639c9 *src/utilities.h
d9d12bd4f4528b5ff2b0dbf1c48035a3 *tests/testthat.R
4a4bba5681b679eab2cd020d77af6313 *tests/testthat/test_read.R
92efba75eebd3a2cd02ffa47a36defdd *vignettes/DNAshapeR.Rmd
