5e610d75432242fd2fba0528acce198d *DESCRIPTION
0c9d977b83b38b39c582af3e7b3e50f2 *NAMESPACE
a85ca1b9b58b2456afe381a1bacf0b5e *NEWS.md
123219d50fe35b7a5f93a10ef7e13044 *R/AllGenerics.R
36596ce2ac581b4298a46d362fc28b17 *R/CNVMetrics.R
99fa07a639bf4111da397dc938d77160 *R/CNVMetricsInternalMethods.R
9b1fdab425b1e3602580e12a8237762f *R/CNVMetricsLog2ratioInternalMethods.R
317023ebdcf66721be160b3b0cffd294 *R/CNVMetricsMethods.R
1c3315ff28679178eda235e19fbac623 *R/CNVMetricsOverlapInternalMethods.R
1bc33a6ea3c6f3a76d008ab5f619a91b *R/CNVMetricsSimulations.R
80fb75eb62dba05cc7b7e2f615cceb88 *README.md
14a33093f5372df35528b2bde552ec82 *build/vignette.rds
18d1550cad4acfad233da723477c197c *inst/CITATION
bfd97005ce00530aa4a94b7fe4edbe81 *inst/doc/CNVMetrics.R
030caea77525e2a5170df5f162b7af3d *inst/doc/CNVMetrics.Rmd
ce4d0bc8e11373bd1d6f799c8365a467 *inst/doc/CNVMetrics.html
78b79f396042a4f73666d793e70b160d *inst/extdata/demo01.seg
96fc49e415c2c57ff8c7580422951ea6 *inst/extdata/demo02.seg
b1f7e9b3f80708ca4b846d6137df6d79 *inst/extdata/demo03.seg
8acc6d39a281da5981a95be837ffb760 *inst/extdata/mm10.blacklist.bed
b416715968205090da4c2506982867a1 *inst/extdata/mousePairedOrganoids.txt
9b425878d4d5ee7cb7e38c1293e1753c *inst/extdata/mousePairedOrganoidsInfo.txt
d7133b50e9e3dbb55dc8652e245a309b *man/CNVMetrics-package.Rd
041a9b1d5b59144ab0bb3feaf1f6717f *man/calculateJaccard.Rd
bc5aa02ce0b8ef6e17f27a3b8c0a3094 *man/calculateLog2ratioMetric.Rd
5aa2b680f70566f04407472af9b792da *man/calculateOneLog2valueMetricT.Rd
0c579c8fc8d14f41135a03261588f18a *man/calculateOneOverlapMetricT.Rd
24d3bcfb36978c9ba4bf9d9e35da71f1 *man/calculateOverlapMetric.Rd
baf164be9b4a9c74531e8ab5f48ff35f *man/calculateSorensen.Rd
29e3ddeccdb838492b292e6674695fa9 *man/calculateSzymkiewicz.Rd
f981e1e02a7a2c58c97806b0a669e95d *man/calculateWeightedEuclideanDistanceFor2Samples.Rd
f3ba7ac88e6af6e1698f4c6a49d36d65 *man/createDisjoinSegmentsForTwoSamples.Rd
36903abb97f3252dd5c137f58ff982b6 *man/figures/CNVMetrics.png
2619ff571ff8611c577cdeb5399bec8f *man/figures/CNVMetrics_text.jpg
f8e9bd0fabd6e73bf95bbdf9454f6d29 *man/is.CNVMetric.Rd
f9bb40e73a35d845c05170a5a30e6f55 *man/plotMetric.Rd
40ed07429bc746de493273a27af96ac4 *man/plotOneMetric.Rd
4baabc204203f43eacaa9aa5d17990a1 *man/print.CNVMetric.Rd
c7755ebc457a8a11796cb5c45ae62015 *man/processChr.Rd
795adc1b11c9432e902c96bcf4339185 *man/processSim.Rd
6b85144f34e8974dcda883329548406b *man/simChr.Rd
a4249cf253cf9c419a606026b6170d1e *man/validateCalculateOverlapMetricParameters.Rd
e6299fffcea506b43b6a46bd1bae7347 *man/validatecalculateLog2ratioMetricParameters.Rd
a7c4c4b5c09e845b1bfc4c04c242b28c *tests/testthat.R
e07e223eaf478ece0ea0d5b74bcc6fed *tests/testthat/test-CNVMetricInternalMethods.R
3fbbe8f4db8cf06addfa674f7566159b *tests/testthat/test-CNVMetricMethods.R
44358c94c9a4fefb2eca56461d1e4ce7 *tests/testthat/test-CNVMetricsLog2ratioInternalMethods.R
3670ce0f32c0082a6f2438d61e618e56 *tests/testthat/test-CNVMetricsOverlapInternalMethods.R
258f701489b57a6a70d9756ae3f452a4 *tests/testthat/test-CNVMetricsSimulationMethods.R
f0d5bcebbce4a4e500bae2b45462598e *tests/testthat/test-genericCNVMetric.R
030caea77525e2a5170df5f162b7af3d *vignettes/CNVMetrics.Rmd
b6108f45e4d29f14e64f56f52ebc6882 *vignettes/CNVMetrics.bibtex
6336f3b6a197e4fb08f0c89eb346971d *vignettes/CNVMetrics_partial_workflow_v10.png
2619ff571ff8611c577cdeb5399bec8f *vignettes/CNVMetrics_text.jpg
4232b0e32e92b71d35573eb6786f5d98 *vignettes/CNV_mM30_mM10_v03_Feb_08_2021.jpeg
839c81dd5ac184295382066a8a2ab7c6 *vignettes/CNV_mM30_mM10_v03_Feb_08_2021_small.png
0bcf63880c068ab224ab218d26181d25 *vignettes/Input_CNV_call_300ppi_v02_low_quality.jpg
2add5458e4abc06ab89fe018e69d3a09 *vignettes/Input_CNV_log2ratio_v01_low_quality.jpg
1ba69c68873b0325d18f926e42f934b9 *vignettes/Simulation_chromosome_workflow_part02_v03.png
a114e64eda4baf8e98f533ed75796814 *vignettes/Simulation_chromosome_workflow_part_01_v03.png
