c278a175e913a8c3807314fe6350395c *DESCRIPTION
f44ce229cb29ccf573c2b0848573a154 *NAMESPACE
8dfac3d245a55117960c6a2a84743d02 *NEWS
6bf4f49f50f29b5c6e3f0e40cbdc5554 *R/ASDiscover_functions.R
45aaeed9366c29c5df125f9fabda1941 *R/ASpli_methods.R
8c1715ce68146389cac3f506e53db2e1 *R/ASpli_show_methods.R
ac73bc53da57841a331af280253885c2 *R/DUreport_functions.R
d388366d8a0b535844c44b9fe79f1f63 *R/binGenome_functions.R
a0a91dfadc73a938e1a78d1a63c5b5b5 *R/bins_DEXSeq.R
b44311cb1a0ddd28924436e320ad4aa8 *R/common_functions.R
229322bd631cad647e104dd76689ab1e *R/example_data.R
95cd48d13c18682e2ae45a995eb56fe6 *R/filterCounts.R
156a3e84bf22b4a683106e2449b573af *R/filter_functions.R
30c0a0ca61b7ebc14cbc6ad386290567 *R/getConditions_function.R
795f9f1c0e07937230611b531e33f496 *R/jDUreport_functions.R
169a27ef17fb61c53ef5548247a1f599 *R/loadBam_function.R
e84681fb2429433165770fffd3577b7a *R/mergeBinDUAS_functions.R
11e0f1962955fa52f1889e35ce9d482f *R/plotBins_functions.R
54e9c23a4abaa24abbd32a893b46c6d2 *R/plotGenomeRegions_functions.R
2482676da0330e3ec2a6b1b5ff2c85c0 *R/readCounts_functions.R
034b6e69503140041adca3de57f95a8d *R/splicingReport_functions.R
687f587041b679bbe4770b5029155c00 *R/subset_methods.R
6a853bd8aa109a9f1aabf322ac2710ad *build/vignette.rds
cbb999793c68d3075ce60a9487b35859 *inst/CITATION
1448e02c40af11dcefc85f23055172c5 *inst/doc/ASpli.R
6c98a5d4caa6545c0109051e23c1ae3f *inst/doc/ASpli.Rnw
f61d0f153276fd63411d21639f11f4dc *inst/doc/ASpli.pdf
0728be11567fe4483bccf6310a175310 *inst/extdata/A_C.bam
78657264c31713ef1a04ccf98bd0d76a *inst/extdata/A_C.bam.bai
01050255ece67cfbf3305efb09ba312e *inst/extdata/A_C_0.bam
dc24486cf04fbe769e806226ec3461c4 *inst/extdata/A_C_0.bam.bai
976c49e3f28840c19214e249509787fb *inst/extdata/A_C_1.bam
1737225874621b918f67faacc4ef59c0 *inst/extdata/A_C_1.bam.bai
40e5b30bb5bfee10247ce72262543518 *inst/extdata/A_C_2.bam
abf9b23ddd6d0ca9c85b9aaf85cbecc6 *inst/extdata/A_C_2.bam.bai
05bff3987c49458abcfc130f8c026df5 *inst/extdata/A_D.bam
4377be925cb032f72049092d5ee1453e *inst/extdata/A_D.bam.bai
6df717cb64a4640e02959ae7163f8115 *inst/extdata/A_D_0.bam
c548e13dab842845e9c46bf7cecacc16 *inst/extdata/A_D_0.bam.bai
e0a467934f0fff4676a4aa275939295e *inst/extdata/A_D_1.bam
9ac10b276a82b3ff4349e93048d927d4 *inst/extdata/A_D_1.bam.bai
625254e187de8e229059007af8651c80 *inst/extdata/A_D_2.bam
e0b392623b691fd2a896833e7fcb76e4 *inst/extdata/A_D_2.bam.bai
44b598fbf17e3245b4c20ec7549a389c *inst/extdata/B_C.bam
aac27065577f1aef796a27c982a02115 *inst/extdata/B_C.bam.bai
7a33871d5041db6bb9677c74e04a3cc6 *inst/extdata/B_C_0.bam
bd6b4b2c6427551a09b0881c36342f04 *inst/extdata/B_C_0.bam.bai
52e4181587de71a4e65fa75fe1ac7e6d *inst/extdata/B_C_1.bam
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98bc2947d22d28e8f994bff3a646dc80 *inst/extdata/B_C_2.bam
2eb7246bbf14c803879bc208172a52ab *inst/extdata/B_C_2.bam.bai
0b00419964f37e1e109cb5bc98608a36 *inst/extdata/B_D.bam
da28a074b3de156e472cfa67410dea00 *inst/extdata/B_D.bam.bai
b1694eebfa24f2e72782d08152e05016 *inst/extdata/B_D_0.bam
2daa58549bff2a404791393390d7ee96 *inst/extdata/B_D_0.bam.bai
74812f1bcdebbf9fdac8a3c242b7a88f *inst/extdata/B_D_1.bam
02a08654aaa121566a1b82e849455d13 *inst/extdata/B_D_1.bam.bai
234b9394f5fb97497119280251218b79 *inst/extdata/B_D_2.bam
01819a132799c4cb1b69cdab3e996b6f *inst/extdata/B_D_2.bam.bai
b417f146aaaad2b5d073d68371d29080 *inst/extdata/genes.mini.gtf
44a5aeb61cf96cf73d65da2e9eee4f54 *man/ASpli-deprecated.Rd
8cc74c056a4f533d808c8d6db32f6446 *man/ASpli-package.Rd
17383e3f1a98cf046c58517946fb7f5b *man/ASpliAS-class.Rd
3e88b86daa153dd2236b6114cff10c41 *man/ASpliCounts-class.Rd
db9e5a21e9997f4442745b647275f7f1 *man/ASpliCounts.Rd
1827d236070d29bb7e4f52f40b18d872 *man/ASpliDU-class.Rd
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983aac4d17994a7bdc28412566cb042b *man/ASpliIntegratedSignals-class.Rd
1a75f105b8ebfc985a62ef7c006ec554 *man/ASpliJDU-class.Rd
0b267696cf8dfd13aefa19255c62ba68 *man/ASpliSplicingReport-class.Rd
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406aed372d1ed67231e98d98b9516da0 *man/DUreportBinSplice-method.Rd
a0a2d42f0f48b21f46f9b6c1e70e37ef *man/acc_AS.Rd
a3bb64c7f18c215fe9719d2eb44f86fe *man/acc_DU.Rd
fb656a20022478335ddda6c0dfeb9d27 *man/acc_JDU.Rd
26fc46334eb0982451d7b239d6189268 *man/acc_MergedReport.Rd
af0f9037e40d6f120f482190177f193b *man/acc_counts.Rd
58d31060a4580c6efd461f7591ad8732 *man/acc_features.Rd
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0b7ae939ac9def57a8a200adfada3a50 *man/binGenome-methods.Rd
32d86b7a01da2a95374461a009bc86e1 *man/binGenome.Rd
44f85a2f8034bfa30c869cd130754296 *man/containsJunctions-function.Rd
7e2b01cb087e4c415f75d78e46d7f9eb *man/example_data.Rd
0a832ecc94380ed7fd942980125c3ba6 *man/exportIntegratedSignals.Rd
80fa9bf0176dc5f162ee4dc2778213bb *man/exportSplicingReports.Rd
484592803e5f0cdbd13bce549a163477 *man/filterDU-method.Rd
6c8bd542ab0e5f2948adb8a39d49ee39 *man/filterSignals.Rd
b20f667e6d617df2823f98228218a826 *man/gbCounts.Rd
5e5a7c4fb6fcf287751663f2521368bf *man/gbDUreport-method.Rd
c661ef9014f934d8bdfd9c6b4bbeeb25 *man/getConditions-function.Rd
254211cace57a36b2516bd1cc4983486 *man/integrateSignals.Rd
9a5dd1da34681e02fb4a93c61705ef87 *man/jCounts-methods.Rd
741f5a0aa521beacb99d9b9f42018ff0 *man/jDUreport.Rd
2741e78e1ba48e4d923e17b0b21a83ef *man/junctionDUreport.Rd
32959dbe822a4f6b23b41553db8151c7 *man/loadBAM.Rd
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da6c611cb897a41577aedb328d95cdd6 *man/plotGenomicRegions.Rd
aac66f7b9b236d9f90185111d1540b0d *man/rds.Rd
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4b694a309410191464df1feb2b713f89 *man/subset-methods.Rd
7321570595e8ba0af8ea6f11b19fcb0c *man/write-methods.Rd
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