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Set Based Visualizations for Next-Gen Sequencing Data

Bioconductor version: Release (3.19)

seqsetvis enables the visualization and analysis of sets of genomic sites in next gen sequencing data. Although seqsetvis was designed for the comparison of mulitple ChIP-seq samples, this package is domain-agnostic and allows the processing of multiple genomic coordinate files (bed-like files) and signal files (bigwig files pileups from bam file).

Author: Joseph R Boyd [aut, cre]

Maintainer: Joseph R Boyd <jrboyd at>

Citation (from within R, enter citation("seqsetvis")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Overview and Use Cases HTML R Script
Reference Manual PDF


biocViews ChIPSeq, MultipleComparison, Sequencing, Software, Visualization
Version 1.24.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License MIT + file LICENSE
Depends R (>= 3.6), ggplot2
Imports cowplot, data.table, eulerr, GenomeInfoDb, GenomicAlignments, GenomicRanges, ggplotify, grDevices, grid, IRanges, limma, methods, pbapply, pbmcapply, png, RColorBrewer, Rsamtools, rtracklayer, S4Vectors, scales, stats, UpSetR
System Requirements
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Suggests BiocFileCache, BiocManager, BiocStyle, ChIPpeakAnno, covr, knitr, rmarkdown, testthat
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Follow Installation instructions to use this package in your R session.

Source Package seqsetvis_1.24.0.tar.gz
Windows Binary
macOS Binary (x86_64) seqsetvis_1.24.0.tgz
macOS Binary (arm64) seqsetvis_1.24.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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