multiMiR
This is the released version of multiMiR; for the devel version, see multiMiR.
Integration of multiple microRNA-target databases with their disease and drug associations
Bioconductor version: Release (3.23)
A collection of microRNAs/targets from external resources, including validated microRNA-target databases (miRecords, miRTarBase and TarBase), predicted microRNA-target databases (DIANA-microT, ElMMo, MicroCosm, miRanda, miRDB, PicTar, PITA and TargetScan) and microRNA-disease/drug databases (miR2Disease, Pharmaco-miR VerSe and PhenomiR).
Author: Yuanbin Ru [aut], Matt Mulvahill [aut], Spencer Mahaffey [cre, aut], Katerina Kechris [aut, cph, ths]
Maintainer: Spencer Mahaffey <Spencer.Mahaffey at cuanschutz.edu>
citation("multiMiR")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("multiMiR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("multiMiR")| The multiMiR user's guide | HTML | R Script |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | Homo_sapiens_Data, Mus_musculus_Data, OrganismData, Rattus_norvegicus_Data, Software, miRNAData |
| Version | 1.34.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (9 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.4) |
| Imports | stats, XML, RCurl, purrr (>= 0.2.2), tibble (>= 2.0), methods, BiocGenerics, AnnotationDbi, dplyr |
| System Requirements | |
| URL | https://github.com/KechrisLab/multiMiR |
| Bug Reports | https://github.com/KechrisLab/multiMiR/issues |
See More
| Suggests | BiocStyle, edgeR, knitr, rmarkdown, testthat (>= 1.0.2) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | EpiMix |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | multiMiR_1.34.0.tar.gz |
| Windows Binary (x86_64) | multiMiR_1.34.0.zip |
| macOS Binary (big-sur-x86_64) | multiMiR_1.34.0.tgz |
| macOS Binary (sonoma-arm64) | multiMiR_1.34.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/multiMiR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/multiMiR |
| Bioc Package Browser | https://code.bioconductor.org/browse/multiMiR/ |
| Package Short Url | https://bioconductor.org/packages/multiMiR/ |
| Package Downloads Report | Download Stats |