illuminaio
Parsing Illumina Microarray Output Files
Bioconductor version: Release (3.19)
Tools for parsing Illumina's microarray output files, including IDAT.
Author: Keith Baggerly [aut], Henrik Bengtsson [aut], Kasper Daniel Hansen [aut, cre], Matt Ritchie [aut], Mike L. Smith [aut], Tim Triche Jr. [ctb]
Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>
Citation (from within R, enter
citation("illuminaio")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("illuminaio")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("illuminaio")
Description of Encrypted IDAT Format | ||
Introduction to illuminaio | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DataImport, Infrastructure, Microarray, ProprietaryPlatforms, Software |
Version | 0.46.0 |
In Bioconductor since | BioC 2.12 (R-3.0) (11.5 years) |
License | GPL-2 |
Depends | |
Imports | base64 |
System Requirements | |
URL | https://github.com/HenrikBengtsson/illuminaio |
Bug Reports | https://github.com/HenrikBengtsson/illuminaio/issues |
See More
Suggests | RUnit, BiocGenerics, IlluminaDataTestFiles(>= 1.0.2), BiocStyle |
Linking To | |
Enhances | |
Depends On Me | normalize450K, RnBeads, wateRmelon, EGSEA123 |
Imports Me | beadarray, bigmelon, crlmm, methylumi, minfi |
Suggests Me | limma |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | illuminaio_0.46.0.tar.gz |
Windows Binary | illuminaio_0.46.0.zip |
macOS Binary (x86_64) | illuminaio_0.46.0.tgz |
macOS Binary (arm64) | illuminaio_0.46.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/illuminaio |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/illuminaio |
Bioc Package Browser | https://code.bioconductor.org/browse/illuminaio/ |
Package Short Url | https://bioconductor.org/packages/illuminaio/ |
Package Downloads Report | Download Stats |