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utilities for exploration of human metabolome database

Bioconductor version: Release (3.19)

Define utilities for exploration of human metabolome database, including functions to retrieve specific metabolite entries and data snapshots with pairwise associations (metabolite-gene,-protein,-disease).

Author: Vince Carey <stvjc at>

Maintainer: VJ Carey <stvjc at>

Citation (from within R, enter citation("hmdbQuery")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

hmdbQuery: working with Human Metabolome Database ( HTML R Script
Reference Manual PDF


biocViews Infrastructure, Metabolomics, Software
Version 1.24.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License Artistic-2.0
Depends R (>= 3.5), XML
Imports S4Vectors, methods, utils
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Suggests knitr, annotate, gwascat, testthat, rmarkdown
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Follow Installation instructions to use this package in your R session.

Source Package hmdbQuery_1.24.0.tar.gz
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macOS Binary (x86_64) hmdbQuery_1.24.0.tgz
macOS Binary (arm64) hmdbQuery_1.24.0.tgz
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