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An R package for quality Control for hydrogen deuterium exchange mass spectrometry experiments

Bioconductor version: Release (3.19)

The hdxmsqc package enables us to analyse and visualise the quality of HDX-MS experiments. Either as a final quality check before downstream analysis and publication or as part of a interative procedure to determine the quality of the data. The package builds on the QFeatures and Spectra packages to integrate with other mass-spectrometry data.

Author: Oliver M. Crook [aut, cre]

Maintainer: Oliver M. Crook <oliver.crook at>

Citation (from within R, enter citation("hdxmsqc")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Qualityt control for differential hydrogen deuterium exchange mass spectrometry data HTML R Script
Reference Manual PDF


biocViews DataImport, MassSpectrometry, Metabolomics, Proteomics, QualityControl, Software
Version 1.0.1
In Bioconductor since BioC 3.19 (R-4.4) (< 6 months)
License file LICENSE
Depends R (>= 4.3), QFeatures, S4Vectors, Spectra
Imports dplyr, tidyr, ggplot2, BiocStyle, knitr, methods, grDevices, stats, MsCoreUtils
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Suggests RColorBrewer, pheatmap, MASS, patchwork, testthat
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Follow Installation instructions to use this package in your R session.

Source Package hdxmsqc_1.0.1.tar.gz
Windows Binary (64-bit only)
macOS Binary (x86_64) hdxmsqc_1.0.1.tgz
macOS Binary (arm64) hdxmsqc_1.0.1.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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