faers
This is the released version of faers; for the devel version, see faers.
R interface for FDA Adverse Event Reporting System
Bioconductor version: Release (3.23)
The FDA Adverse Event Reporting System (FAERS) is a database used for the spontaneous reporting of adverse events and medication errors related to human drugs and therapeutic biological products. faers pacakge serves as the interface between the FAERS database and R. Furthermore, faers pacakge offers a standardized approach for performing pharmacovigilance analysis.
Author: Yun Peng [aut, cre]
, YuXuan Song [aut], Caipeng Qin [aut], JiaXing Lin [aut]
Maintainer: Yun Peng <yunyunp96 at 163.com>
citation("faers")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("faers")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("faers")| FAERS-Pharmacovigilance | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | BiomedicalInformatics, DataImport, Pharmacogenomics, Software |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.19 (R-4.4) (2.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.5.0) |
| Imports | BiocParallel, brio, cli, curl (>= 6.0.0), data.table, httr2 (>= 1.0.0), MCMCpack, methods, openEBGM, rlang, rvest, tools, utils, vroom, xml2 |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/WangLabCSU/faers |
See More
| Suggests | BiocStyle, countrycode, knitr, rmarkdown, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | faers_1.8.0.tar.gz |
| Windows Binary (x86_64) | faers_1.8.0.zip |
| macOS Binary (big-sur-x86_64) | faers_1.8.0.tgz |
| macOS Binary (sonoma-arm64) | faers_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/faers |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/faers |
| Bioc Package Browser | https://code.bioconductor.org/browse/faers/ |
| Package Short Url | https://bioconductor.org/packages/faers/ |
| Package Downloads Report | Download Stats |