DNAshapeR
High-throughput prediction of DNA shape features
Bioconductor version: Release (3.19)
DNAhapeR is an R/BioConductor package for ultra-fast, high-throughput predictions of DNA shape features. The package allows to predict, visualize and encode DNA shape features for statistical learning.
Author: Tsu-Pei Chiu and Federico Comoglio
Maintainer: Tsu-Pei Chiu <tsupeich at usc.edu>
Citation (from within R, enter
citation("DNAshapeR")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DNAshapeR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DNAshapeR")
DNAshapeR | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DNA3DStructure, Software, StructuralPrediction |
Version | 1.32.0 |
In Bioconductor since | BioC 3.3 (R-3.3) (8.5 years) |
License | GPL-2 |
Depends | R (>= 3.4), GenomicRanges |
Imports | Rcpp (>= 0.12.1), Biostrings, fields |
System Requirements | |
URL |
See More
Suggests | AnnotationHub, knitr, rmarkdown, testthat, BSgenome.Scerevisiae.UCSC.sacCer3, BSgenome.Hsapiens.UCSC.hg19, caret |
Linking To | Rcpp |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | DNAshapeR_1.32.0.tar.gz |
Windows Binary | DNAshapeR_1.32.0.zip |
macOS Binary (x86_64) | DNAshapeR_1.32.0.tgz |
macOS Binary (arm64) | DNAshapeR_1.32.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/DNAshapeR |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DNAshapeR |
Bioc Package Browser | https://code.bioconductor.org/browse/DNAshapeR/ |
Package Short Url | https://bioconductor.org/packages/DNAshapeR/ |
Package Downloads Report | Download Stats |