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DAPAR

Tools for the Differential Analysis of Proteins Abundance with R


Bioconductor version: Release (3.19)

The package DAPAR is a Bioconductor distributed R package which provides all the necessary functions to analyze quantitative data from label-free proteomics experiments. Contrarily to most other similar R packages, it is endowed with rich and user-friendly graphical interfaces, so that no programming skill is required (see `Prostar` package).

Author: c(person(given = "Samuel", family = "Wieczorek", email = "samuel.wieczorek@cea.fr", role = c("aut","cre")), person(given = "Florence", family ="Combes", email = "florence.combes@cea.fr", role = "aut"), person(given = "Thomas", family ="Burger", email = "thomas.burger@cea.fr", role = "aut"), person(given = "Vasile-Cosmin", family ="Lazar", email = "vcosminlazar@gmail.com", role = "ctb"), person(given = "Enora", family ="Fremy", email = "enora.fremy@cea.fr", role = "ctb"), person(given = "Helene", family ="Borges", email = "helene.borges@cea.fr", role = "ctb"))

Maintainer: Samuel Wieczorek <samuel.wieczorek at cea.fr>

Citation (from within R, enter citation("DAPAR")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DAPAR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
NEWS Text

Details

biocViews DataImport, GO, MassSpectrometry, Normalization, Preprocessing, Proteomics, QualityControl, Software
Version 1.36.2
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License Artistic-2.0
Depends R (>= 4.3.0)
Imports Biobase, MSnbase, DAPARdata(>= 1.30.0), utils, highcharter, foreach
System Requirements
URL http://www.prostar-proteomics.org/
Bug Reports https://github.com/prostarproteomics/DAPAR/issues
See More
Suggests testthat, BiocStyle, AnnotationDbi, clusterProfiler, graph, diptest, cluster, vioplot, visNetwork, vsn, igraph, FactoMineR, factoextra, dendextend, parallel, doParallel, Mfuzz, apcluster, forcats, readxl, openxlsx, multcomp, purrr, tibble, knitr, norm, scales, tidyverse, cp4p, imp4p (>= 1.1), lme4, dplyr, limma, preprocessCore, stringr, tidyr, impute, gplots, grDevices, reshape2, graphics, stats, methods, ggplot2, RColorBrewer, Matrix, org.Sc.sgd.db
Linking To
Enhances
Depends On Me
Imports Me Prostar
Suggests Me DAPARdata, mi4p
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DAPAR_1.36.2.tar.gz
Windows Binary DAPAR_1.36.2.zip
macOS Binary (x86_64) DAPAR_1.36.2.tgz
macOS Binary (arm64) DAPAR_1.36.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/DAPAR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DAPAR
Bioc Package Browser https://code.bioconductor.org/browse/DAPAR/
Package Short Url https://bioconductor.org/packages/DAPAR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.19 Source Archive