Package: BloodGen3Module
Type: Package
Title: This R package for performing module repertoire analyses and
        generating fingerprint representations
Version: 1.20.0
Date: 2020-11-05
Authors@R: 
    person(given = "Darawan",
           family = "Rinchai",
           role = c("aut", "cre"),
           email = "drinchai@gmail.com",
           comment = c(ORCID = "0000-0001-8851-7730"))
Description: The BloodGen3Module package provides functions for R user performing module repertoire analyses 
 and generating fingerprint representations. Functions can perform group comparison or 
 individual sample analysis and visualization by fingerprint grid plot or fingerprint heatmap. 
 Module repertoire analyses typically involve determining the percentage of the constitutive genes 
 for each module that are significantly increased or decreased.  
 As we describe in details;https://www.biorxiv.org/content/10.1101/525709v2 and https://pubmed.ncbi.nlm.nih.gov/33624743/, 
 the results of module repertoire analyses can be represented in a fingerprint format, 
 where red and blue spots indicate increases or decreases in module activity. 
 These spots are subsequently represented either on a grid, 
 with each position being assigned to a given module, 
 or in a heatmap where the samples are arranged in columns and the modules in rows.
Depends: R (>= 4.1)
License: GPL-2
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
Imports: SummarizedExperiment, ExperimentHub, methods, grid, graphics,
        stats, grDevices, circlize, testthat, ComplexHeatmap(>=
        1.99.8), ggplot2, matrixStats, gtools, reshape2,
        preprocessCore, randomcoloR, V8, limma
biocViews: Software, Visualization, GeneExpression
Suggests: RUnit, devtools, BiocGenerics, knitr, rmarkdown
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/BloodGen3Module
git_branch: RELEASE_3_23
git_last_commit: 46df5a2
git_last_commit_date: 2026-04-28
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28
NeedsCompilation: no
Packaged: 2026-04-28 21:33:43 UTC; biocbuild
Author: Darawan Rinchai [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-8851-7730>)
Maintainer: Darawan Rinchai <drinchai@gmail.com>
Built: R 4.6.0; ; 2026-04-29 04:35:14 UTC; unix
