f1d8bd8a22b689600bf99c2214dd25251042ce919526633968ec0274f7d56d89 4162 DESCRIPTION
4a75c2ee525f7f9f5c5a699ef3eab8dad94ac5325691f77751b81c5c597c7383 4171 INDEX
d3c89c3bf422a1090ac29eec8c1bd41d45e14d95b91b7dd521b9d8bb5b1d0c42 6569 Meta/Rd.rds
476f32ca95348d5229799bd0009cacd1c7813e1e5542cbbf5830659889a68374 260 Meta/data.rds
b4f074bc0f45cfe56d976c0d67a1453067f4b34693828ed02d674a6641b3e332 123 Meta/features.rds
5dff1072a217418a2bfa04b3c2ff32fbe017512e952d84aee02a2f1190fa945f 6756 Meta/hsearch.rds
ae78ceec6457616c5ba6ebcee098dd4824a64a034e0a50fc3058fe3ba9c16934 5402 Meta/links.rds
a017f373aa9ad556e1e5389b0c98fdad9cdb1c14c10bbcb1d6401f258ba77691 2190 Meta/nsInfo.rds
2e3ff423cc2b611e74d41f7369638c44c3cfb42fd64ad7d71d400842d3017c44 2542 Meta/package.rds
4c19c47e3aaebcb4662da66c0dafa496dfedb612acb5456115bb77b1f985f429 463 Meta/vignette.rds
8584276257ee8382aa4b7534bd1d7d1ed1c35061fe48bd7afd27459855646548 9563 NAMESPACE
00d59015317a510a003e782e5b1691c779be963a091960dd7e7ef874f93ae958 27869 NEWS
570ca456b280cdeb201ef5ebdf22dc8f80092e2c0c68e33c7f73340e420f3759 1058 R/Biostrings
d949a2834942223499296473e2c04e08101ca0463fe2aa762fc0ada25d934d02 1509338 R/Biostrings.rdb
ddd8847f9b89364941a00cc282e36c618d400e27a25740e720c7f9dc43c82bb4 14637 R/Biostrings.rdx
0fd31e8c78421ef9fff82fc97a6e4f4dd9cb7c51492c5ae10d15c8e9514095e3 676 README.md
9980791ed1286238c4e61725df4d70e30b01594f31f080d60bfeef3f50e49f7c 778 data/BLOSUM100.rda
0011e198b2afb5397f9cbe5ac795f432b5c6cf2594fb405503c316fa63938377 698 data/BLOSUM45.rda
16c017dddbf6df49225732d2459f53587cee30a242c0c305ed38eb72ccfe4ca9 693 data/BLOSUM50.rda
27bbd724f717eee9af1890f8bab0f54cb922535a1d2a9db35cb88ed760edaf50 686 data/BLOSUM62.rda
b92c1df85ea2b9f3da5f8518476058c61750cab945b544697547d7fee54df565 711 data/BLOSUM80.rda
ff4427e1a2f0baabc0a2181a11475e1292580d537121462047a7f68ae8731c38 4533 data/HNF4alpha.rda
d9083c4615aaeff5735a1d3ec4b3339d7477b266784d77f225154b3ea4bda172 738 data/PAM120.rda
2b03008dd009a0f7ec8f035f7adc08c5e0996f66b1001bb9c91f47205962fa60 704 data/PAM250.rda
8a5a44e53458e9a0f2e6969c046357f51d2b89a5819d5679b113341115e1ae6a 835 data/PAM30.rda
c325f67e6fef08e7f5ac1230f1b4d3195e1cd3cca929f77c9e39aa787b24ab66 803 data/PAM40.rda
fce667edf9b4854ded1aa88508b944bd4138ad3a6879f336a6a58a368f5c89ab 807 data/PAM70.rda
e928fe4b7b146d39749d2c96311420e2cf6381bdcb18697d653d72fedb84105b 66419 data/yeastSEQCHR1.rda
b505e9aaa4d1104d333f3ed527ab3229294e6279074b44f6635782f8500f18bf 3612 doc/Biostrings2Classes.R
fe414ab58a12c63c4f4ce44b71550aede4b97d6ee25d55b81f62e0811d754fbe 8514 doc/Biostrings2Classes.Rnw
ba8ac7fc47299363414c15be04793883dcde61ff6acb3587f40180b224d5365d 121515 doc/Biostrings2Classes.pdf
34c5febea83e3d3a5620255b328f27e3cfe75823c664bbe02db5175e845638d2 9332 doc/BiostringsQuickOverview.Rnw
2044257c96d01bfd7094a3dd263cf2971b05e11e37772d60187335c45432da87 72619 doc/BiostringsQuickOverview.pdf
2ed99dea7db28efc204778edeceff165b048eddb0b5df91248ec83769a38471d 4455 doc/MultipleAlignments.R
36bae98e6590637bffed3a2ae87fb8ee15ed773a5e499243a64b9f297c3be6bb 9955 doc/MultipleAlignments.Rmd
6f0f3c1368b7ef109232727db601bb93d0edd3baf3ab578bbc174ca85dff5123 88081 doc/MultipleAlignments.html
c46622167f23930adf24bd2aa257f1d2ec7ba4048486ee16d52b395cfe43db24 1206 doc/PairwiseAlignments.Rnw
6d170cf2ffb7258ca780ea6186265e2690972fa2e1efc1d1b360bb130168a6de 20538 doc/PairwiseAlignments.pdf
2ac7d54422dc0b1b8ef3656a56555b6b3a7f05749f75c497dbb3d56e2b49c552 3260 doc/index.html
cf00f836a425c728feeb054d052122227e20002ea03df18e694a206c0d5a196e 3304 doc/matchprobes.R
83887d5ca0002a03d683bf3f45791c3f85b6e4cffae54cb2930a1aa64e3156a7 7906 doc/matchprobes.Rmd
7dd35a8d93c73c573431ea60debb452d07f2ae453b17a5042d8211e595e5f019 387102 doc/matchprobes.html
0f21239cae29f8513d2ab6c4a513c8a00374a0a2a345ec5d36779637b7f684e3 6313 extdata/Phylip.txt
9deadc2c358cf779f39952412463ff16957553f789ab1d4b0d25aafa1e0e4493 440 extdata/README
8bde1f20039225c3c8cbfe68952045e3f3fbd3c6e8b0586c0ddce22b5d675f81 1633 extdata/Sc.fa
18de44c7bb057d8feb71e630fc3e67c388fca337b61e164a8a19d772cb7dfdfa 1653 extdata/Sp.fa
8f3b72f4223479696c21748c769b1896551830be77d6e1b2cdcfff3bdbee3656 11525633 extdata/dm3_upstream2000.fa.gz
a6ce5382dfb3a7027f18aa7d74ea82a5a977c9e92ea8a9ef2650646d0bff55f9 169 extdata/fastaEx.fa
26d28a5df3565ec57e8c68ade31528602a6f4e113da6b4cba0f379ab2e2b2358 495 extdata/hg18chr8_gap.txt
f13b8f59bfd43823ac9e959278af8526232706f2a871de07ef5550de2e2d81bc 667 extdata/hg18chrY_gap.txt
1e1941aba7183ca4e297e047fe8e8d72919dc7902bdba0cb3a06de2352757ccd 37906 extdata/msx2_mRNA.aln
24e90d5e1de0833992806132afc622798b409935ef3bfdcafc22c824ac92ccc2 31740 extdata/s_1_sequence.txt
befe319269ed368b97c900c1ef75a5be257d9dcb13708e61fc80002fe949f431 27326 extdata/someORF.fa
3ca24a88beae36b256179f7a01d822ebd65274687b61f824aec2ab00177c9684 8093 extdata/someORF.fa.gz
c76267182a41d235fa4a3a898306faa02f09d9b5cebf30ef47b139ab928828e8 34150 help/AnIndex
7dfc6e01ef17d67cff0a01c88b1e12fdc7a140354abb93eb2e21db9b15fbbdb5 370511 help/Biostrings.rdb
0f2e0237b90b067d6e9d41b6edb04dcedf962d326903e5903a9ddb6aaf1d318a 1487 help/Biostrings.rdx
ac556f5f26228eeb20b29206865d304f05f41c075238796e90ab94f42aaee5a9 5630 help/aliases.rds
618cd55f867d3f0c2da93d4ad1e27ab16448ad423780cc28e2a6048fd4c28ad5 760 help/paths.rds
53cf90aac61dc29b8adcad0e09871421ca2c8515d0518c4c625ad40569bc80ee 71479 html/00Index.html
3d290675266eebeba6efff07db879d699843c80bf428f9e71000e2fc6078f5db 2133 html/R.css
b4854da69628902e18aa078468bad8499b0b6b248bb50161fdeeca89f8750b06 6264 include/Biostrings_defines.h
68ad6092ede51eea4264ee6d3b6cb699821faf0113ce8e51a195d4fbff709098 6653 include/Biostrings_interface.h
455e1744e66ad4d18073e3f46c01bb4059300f34723a39154f6ea49e251793ca 4222 include/_Biostrings_stubs.c
856b8e138c6b42fb4e5c6664f519b561a75842627816b5ce6e66cce98537460b 211808 libs/Biostrings.so
e2e809135e7280dcc2f578d75b52909006f846d73c39791d7d52967cff2a3531 7870 libs/symbols.rds
eac582f01527d80c8e313a91d585a52a7e040d6d321d53845eab41324e891309 10984 unitTests/test_MultipleAlignment.R
8d33686f64a9f8c1726c9d7af41cd64c40782e69eb3be565b5182df03880c306 1929 unitTests/test_XString.R
4d040a6d4bc9aa5d57126bc1aba349ff51e8293897a7d9cd6c7cde02a26d9749 8250 unitTests/test_matchDNAPattern.R.FIXME
e0ecbfeb5c36d0aa1ba0abe0e4291cf59be30e6f15b39cc34a717772f0a8aea6 1398 unitTests/test_seqinfo-methods.R
82761f506b20fcd1aa5a3e1d14e79ff26eaeb69324251f9651919f8486863382 5381 unitTests/test_twoWayAlphabetFrequency.R
