Package: scviR
Date: 2025-05-02
Title: experimental inferface from R to scvi-tools
Version: 1.10.0
Authors@R: 
    c(person(
        "Vincent", "Carey", role = c("aut", "cre"),
        email = "stvjc@channing.harvard.edu",
        comment = c(ORCID = "0000-0003-4046-0063")
     )
    )
Description: This package defines interfaces from R to scvi-tools.  A
        vignette works through the totalVI tutorial for analyzing
        CITE-seq data.  Another vignette compares outputs of Chapter 12
        of the OSCA book with analogous outputs based on totalVI
        quantifications. Future work will address other components of
        scvi-tools, with a focus on building understanding of
        probabilistic methods based on variational autoencoders.
License: Artistic-2.0
Encoding: UTF-8
Depends: R (>= 4.3), basilisk, shiny, SingleCellExperiment
Imports: reticulate, BiocFileCache, utils, pheatmap,
        SummarizedExperiment, S4Vectors, limma, scater, stats,
        MatrixGenerics
Suggests: knitr, testthat, reshape2, ggplot2, rhdf5, BiocStyle
VignetteBuilder: knitr
biocViews: Infrastructure, SingleCell, DataImport
RoxygenNote: 7.3.3
URL: https://github.com/vjcitn/scviR
BugReports: https://github.com/vjcitn/scviR/issues
Config/pak/sysreqs: libcairo2-dev libfontconfig1-dev libfreetype6-dev
        libfribidi-dev make libharfbuzz-dev libicu-dev libjpeg-dev
        libpng-dev libtiff-dev libwebp-dev libssl-dev python3
        zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:21:42 UTC
RemoteUrl: https://github.com/bioc/scviR
RemoteRef: RELEASE_3_22
RemoteSha: 76c92782ebf0826ca261fc8f35c0495030d12e99
NeedsCompilation: no
Packaged: 2025-12-11 07:15:49 UTC; root
Author: Vincent Carey [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-4046-0063>)
Maintainer: Vincent Carey <stvjc@channing.harvard.edu>
Built: R 4.5.2; ; 2025-12-11 07:18:25 UTC; unix
