.getRunsAndTotals	dot-getRunsAndTotals
bigBinSize	bigBinSize
binnedDeltaPlot	binnedDeltaPlot
binnedDeltaSE	binnedDeltaSE
binnedSummarizedExperiment	binnedSummarizedExperiment
binSummarizedExperiment	binSummarizedExperiment
deltaSE	deltaSE
downshiftDFtoMatrix	downshiftDFtoMatrix
generatePermutation	generatePermutation
getDeltaSE	getDeltaSE
getLopsidedness	getLopsidedness
getMeanNormalizedCountsSE	getMeanNormalizedCountsSE
getNormalizedCountsSE	getNormalizedCountsSE
getOverlapWeights	getOverlapWeights
getPValueCutoff	getPValueCutoff
getRunAndLopsidednessStatistics	getRunAndLopsidednessStatistics
getRunStatistics	getRunStatistics
getRunStatisticsDist	getRunStatisticsDist
getRunTotals	getRunTotals
getSignificantRegions	getSignificantRegions
getSizeFactorsDF	getSizeFactorsDF
getSizeFactorsSE	getSizeFactorsSE
miniDeltaSE	miniDeltaSE
miniSE	miniSE
miniSEDF	miniSEDF
numPermutations	numPermutations
plotSignificantRegions	plotSignificantRegions
plotTitle	plotTitle
pValue	pValue
rebinToMultiple	rebinToMultiple
regionOfInterest	regionOfInterest
significanceType	significanceType
significantRegions	significantRegions
significantRegionsPlot	significantRegionsPlot
smallBins	smallBins
smallBinSize	smallBinSize
smallerDeltaSE	smallerDeltaSE
smallSetOfSmallBins	smallSetOfSmallBins
viewpointRegion	viewpointRegion
weightsExampleBins	weightsExampleBins
weightsExampleGr	weightsExampleGr
