addKnowledge            addKnowledge
areaCAT                 areaCAT
CAT                     CAT
checkNormalization      checkNormalization
createColors            createColors
createConcordance       createConcordance
createEnrichment        createEnrichment
createMocks             createMocks
createPositives         createPositives
createSplits            createSplits
createTIEC              createTIEC
DA_ALDEx2               DA_ALDEx2
DA_ANCOM                DA_ANCOM
DA_basic                DA_basic
DA_corncob              DA_corncob
DA_dearseq              DA_dearseq
DA_DESeq2               DA_DESeq2
DA_edgeR                DA_edgeR
DA_limma                DA_limma
DA_linda                DA_linda
DA_Maaslin2             DA_Maaslin2
DA_maaslin3             DA_maaslin3
DA_MAST                 DA_MAST
DA_metagenomeSeq        DA_metagenomeSeq
DA_mixMC                DA_mixMC
DA_NOISeq               DA_NOISeq
DA_Seurat               DA_Seurat
DA_ZicoSeq              DA_ZicoSeq
enrichmentTest          enrichmentTest
extractDA               extractDA
extractStatistics       extractStatistics
fitDM                   fitDM
fitHURDLE               fitHURDLE
fitModels               fitModels
fitNB                   fitNB
fitZIG                  fitZIG
fitZINB                 fitZINB
get_counts_metadata     get_counts_metadata
getDA                   getDA
getPositives            getPositives
getStatistics           getStatistics
iterative_ordering      iterativeOrdering
meanDifferences         meanDifferences
microbial_metabolism    (Data) Microbial metabolism
norm_CSS                norm_CSS
norm_DESeq2             norm_DESeq2
norm_edgeR              norm_edgeR
norm_TSS                norm_TSS
plotConcordance         plotConcordance
plotContingency         plotContingency
plotEnrichment          plotEnrichment
plotFDR                 plotFDR
plotFPR                 plotFPR
plotKS                  plotKS
plotLogP                plotLogP
plotMD                  plotMD
plotMutualFindings      plotMutualFindings
plotPositives           plotPositives
plotQQ                  plotQQ
plotRMSE                plotRMSE
prepareObserved         prepareObserved
ps_plaque_16S           (Data) 60 Gingival Plaque samples of 16S rRNA
                        (HMP 2012)
ps_stool_16S            (Data) 33 Stool samples of 16S rRNA (HMP 2012)
RMSE                    RMSE
runDA                   runDA
runMocks                runMocks
runNormalizations       runNormalizations
runSplits               runSplits
set_ALDEx2              set_ALDEx2
set_ANCOM               set_ANCOM
set_basic               set_basic
set_corncob             set_corncob
set_dearseq             set_dearseq
set_DESeq2              set_DESeq2
set_edgeR               set_edgeR
set_limma               set_limma
set_linda               set_linda
set_Maaslin2            set_Maaslin2
set_maaslin3            set_maaslin3
set_MAST                set_MAST
set_metagenomeSeq       set_metagenomeSeq
set_mixMC               set_mixMC
set_NOISeq              set_NOISeq
set_Seurat              set_Seurat
set_ZicoSeq             set_ZicoSeq
setNormalizations       setNormalizations
weights_ZINB            weights_ZINB
