PhIPData-class          The PhIPData class
PhIPData-methods        Accessing and Modifying Information in PhIPData
                        objects
aliases                 Using aliases to subset virus data
defineBeads             Defining how beads-only samples are encoded.
librarySize             Calculate total read counts for each sample.
peptideLibraries        Peptide libraries
propReads               Proportion of sample reads
subsetBeads             Subset beads-only samples
