AUPR_AUROC_matrix       Function to calculate the AUROC and AUPR of a
                        known network. This function was made to test
                        the R implementation of the KBoost Package.
D4_multi_1              Dream 4 multifactorial pertubation challenge
                        dataset 1
D4_multi_2              Dream 4 multifactorial pertubation challenge
                        dataset 2
D4_multi_3              Dream 4 multifactorial pertubation challenge
                        dataset 3
D4_multi_4              Dream 4 multifactorial pertubation challenge
                        dataset 4
D4_multi_5              Dream 4 multifactorial pertubation challenge
                        dataset 5
G_D4_multi_1            Gold Standard Dream 4 multifactorial
                        pertubation challenge dataset 1
G_D4_multi_2            Gold Standard Dream 4 multifactorial
                        pertubation challenge dataset 2
G_D4_multi_3            Gold Standard Dream 4 multifactorial
                        pertubation challenge dataset 3
G_D4_multi_4            Gold Standard Dream 4 multifactorial
                        pertubation challenge dataset 4
G_D4_multi_5            Gold Standard Dream 4 multifactorial
                        pertubation challenge dataset 5
Gerstein_Prior_ENET_2   Gene Regulatory Network from human ChIP-Seq
                        data in Encode
Human_TFs               Index of human genes' Symbols, Entrez and
                        Ensembl for K-Boost Pacakge that correspond to
                        transcription factors.
IRMA_Gold               IRMA Gold Standard Network
KBoost_human_symbol     Function for KBoost on data from a human sample
                        annotated with Symbol names.
KPC                     Function to calculate the principal components
                        of a kernel.
RBF_K                   Function to calculate the RBF Kernel of a
                        matrix X with width g.
add_names               Function to add names to network for the user.
d4_mfac                 Function to obtain the AUPR and AUROC in the
                        DREAM4 Multifactorial Challenge.
get_prior_Gerstein      Function to build a prior using a previously
                        built Network on ChIP-Seq.
get_tfs_human           Function to automatically assign Human TFs
                        given a list of Symbols.
grid_search_kboost      Function to perform a grid search and find the
                        hyperparameters.
irma_check              Function to produce the AUPR and AUROC Results
                        on the IRMA datasets.
irma_off                IRMA Off Dataset
irma_on                 IRMA On Dataset
kboost                  A function to run KBoost.
kernel_normal           A function to perform feature normalization in
                        kernel space.
kernel_pc_boosting      Function to perform Kernel Principal Component
                        Boosting
net_dist_bin            Function to calculate the distance between
                        nodes.
net_refine              Function to do a heuristic post-processing that
                        improves accuracy. Each column is multiplied by
                        its variance.
net_summary_bin         Function to summarize the GRN filtered with a
                        threshold,
tab_2_matrix_D4         Function to produce the gold standard of the
                        DREAM4 Multifactorial Challenge in matrix
                        format.
write_GRN_D4            Function to write output in DREAM4 Challenge
                        Format.
