annotation_ext          Obtain the file extension for a given organism
                        and annotation
annotation_options      List available annotation options for a given
                        organism
available_projects      List available projects in recount3
available_samples       List available samples in recount3
compute_read_counts     Compute read counts
compute_scale_factors   Compute count scaling factors
create_hub              Create UCSC track hub for BigWig files
create_rse              Create a recount3 RangedSummarizedExperiment
                        gene or exon object
create_rse_manual       Internal function for creating a recount3
                        RangedSummarizedExperiment object
expand_sra_attributes   Expand SRA attributes
file_retrieve           Download a remote file and cache it to re-use
                        later
is_paired_end           Guess whether the samples are paired end
locate_url              Construct the URL to access a particular
                        'recount3' file
locate_url_ann          Construct the URL to a recount3 annotation file
project_homes           Find available project home options
read_counts             Read a counts file
read_metadata           Read the metadata files
recount3_cache          Specify where to cache the recount3 files
recount3_cache_files    Locate recount3 cached files
recount3_cache_rm       Remove recount3 cached files
transform_counts        Transform the raw counts provided by the
                        recount3 project
