calcNearestStringDist	calcNearestStringDist
calculateFitnessScore	calculateFitnessScore
calculateRelativeFC	calculateRelativeFC
collapseMutants	collapseMutantsBySimilarity
collapseMutantsByAA	collapseMutantsBySimilarity
collapseMutantsBySimilarity	collapseMutantsBySimilarity
digestFastqs	digestFastqs
generateQCReport	generateQCReport
groupSimilarSequences	groupSimilarSequences
linkMultipleVariants	linkMultipleVariants
plotDistributions	plotDistributions
plotFiltering	plotFiltering
plotMeanDiff	plotMeanDiff
plotPairs	plotPairs
plotTotals	plotTotals
plotVolcano	plotVolcano
relabelMutPositions	relabelMutPositions
summarizeExperiment	summarizeExperiment
