Visualizing Single Cell and Spatial Transcriptomics

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Documentation for package ‘ggsc’ version 1.6.1

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CalWkdeCpp Two-Dimensional Weighted Kernel Density Estimation And Mapping the Result To Original Dimension
draw_key_bgpoint Key drawing functions
geom_bgpoint geom_bgpoint
geom_scattermore2 geom_scattermore2
plot_lisa_feature plot_lisa_feature
scale_bg_color_identity Create your own discrete scale
scale_bg_color_manual Create your own discrete scale
scale_bg_colour_discrete Create your own discrete scale
scale_bg_colour_identity Create your own discrete scale
scale_bg_colour_manual Create your own discrete scale
sc_dim sc_dim
sc_dim,Seurat sc_dim
sc_dim,SingleCellExperiment sc_dim
sc_dim-method sc_dim
sc_dim_count sc_dim_count
sc_dim_geom_ellipse sc_dim_geom_ellipse
sc_dim_geom_feature sc_dim_geom_feature
sc_dim_geom_label sc_dim_geom_label
sc_dim_geom_sub sc_dim_geom_subset
sc_dim_sub sc_dim_sub
sc_dot sc_dot
sc_dot,Seurat sc_dot
sc_dot,SingleCellExperiment sc_dot
sc_dot-method sc_dot
sc_feature sc_feature
sc_feature,Seurat sc_feature
sc_feature,SingleCellExperiment sc_feature
sc_feature-method sc_feature
sc_geom_annot add the annotation layer for ggsc object
sc_geom_point sc_geom_point
sc_spatial sc_spatial
sc_spatial,Seurat sc_spatial
sc_spatial,SingleCellExperiment sc_spatial
sc_spatial-method sc_spatial
sc_violin sc_violin
sc_violin,Seurat sc_violin
sc_violin,SingleCellExperiment sc_violin
sc_violin-method sc_violin