GVariation              GVariation
Gram-negative_AKL.fasta
                        Gram-negative_AKL
Gram-positive_AKL.fasta
                        Gram-positive_AKL
LeaderRepeat_All.fa     A sample DNA alignment sequences
Rfam                    Rfam
TP53_genes.xlsx         genome locus
adjust_ally             adjust_ally
assign_dms              assign_dms
available_colors        List Color Schemes currently available
available_fonts         List Font Families currently available
available_msa           List MSA objects currently available
extract_seq             extract_seq
facet_msa               segment MSA
geom_GC                 geom_GC
geom_helix              geom_helix
geom_msa                geom_msa
geom_msaBar             geom_msaBar
geom_seed               geom_seed
geom_seqlogo            geom_seqlogo
ggSeqBundle             ggSeqBundle
gghelix                 gghelix
ggmaf                   ggmaf
ggmsa                   ggmsa
merge_seq               merge_seq
plot                    plot method for SeqDiff object
readSSfile              readSSfile
read_maf                read_maf
reset_pos               reset_pos
sample.fasta            A sample data used in ggmsa
seedSample.fa           microRNA data used in ggmsa
seqdiff                 seqdiff
seqlogo                 seqlogo
sequence-link-tree.fasta
                        sequence-link-tree
show                    show method
simplify_hdata          simplify_hdata
simplot                 simplot
theme_msa               theme_msa
tidy_hdata              tidy_hdata
tidy_maf_df             tidy_maf_df
tidy_msa                tidy_msa
tp53.fa                 TP53 MSA
treeMSA_plot            treeMSA_plot
