affylmGUI-package	affylmGU-package
AboutaffylmGUI	internal
affyHelp	internal
affylmGUI	affylmGUI
affylmGUIhelp	internal
affyPlotMA	internal
affyPlotMAcontrast	internal
ChooseCDF	internal
ChooseContrastParameterization	internal
chooseDir	internal
ChooseEbayesStatistic	internal
ComputeContrasts	internal
ComputeLinearModelFit	internal
CopyGraph	internal
DeleteContrastParameterization	internal
DensityPlot	internal
DensityPlotAll	internal
evalRcode	internal
ExportHTMLreport	internal
ExportNormalizedExpressionValues	internal
ExportTopTable	internal
fixSeps	internal
generalPlotFunction	internal
GetComponentsToExportInHTMLreport	internal
GetContrast	internal
GetContrastNamesForHeatDiagram	internal
GetContrastParameterizationName	internal
GetContrasts	internal
GetDEcutoff	internal
GetGeneLabelsOptions	internal
GetJpegOrPngParams	internal
GetJpegOrPngX11Params	internal
GetlimmaDataSetName	internal
GetLogPLMDataChoice	internal
GetMultipleContrasts	internal
GetNormalizationMethod	internal
getPackageVersion	internal
GetParameterizationName	internal
GetPlotLabels	internal
GetPlotSize	internal
GetPlotTitle	internal
GetPValueCutoff	internal
GetResidualTypeChoice	internal
GetRNATypesFrom.ContrastsFromDropDowns.String	internal
GetSetNames	internal
GetSlideNum	internal
GetSlideNums	internal
GetWhichProbes	internal
GetWtAreaParams	internal
GetWtFlagParams	internal
HeatDiagramDialog	internal
HeatDiagramPlot	internal
HTMLplotUsingFunction	internal
ImageArrayPlot	internal
ImageQualityResidualPlot	internal
ImageQualityWeightPlot	internal
initGlobals	internal
IntensityHistogram	internal
IntensityHistogramAll	internal
internal	internal
limmaHelp	internal
LogOddsPlot	internal
NewLimmaFile	internal
NormalizedIntensityBoxPlot	internal
NormalizeNow	internal
nstrstr	internal
NUSEPlotAll	internal
onDestroy	internal
onExit	internal
OpenALimmaFile	internal
OpenCDFandTargetsfiles	internal
OpenCDFFile	internal
OpenLimmaFile	internal
OpenTargetsFile	internal
PlotOptions	internal
QQTplot	internal
RawIntensityBoxPlot	internal
Require	internal
Resize	internal
RLEPlotAll	internal
RNADegradationPlotAll	internal
SaveAsLimmaFile	internal
SaveGraphAsJpeg	internal
SaveGraphAsPDF	internal
SaveGraphAsPNG	internal
SaveGraphAsPostscript	internal
SaveLimmaFile	internal
SetupPlotKeyBindings	internal
SetupPlotMenus	internal
SetWD	internal
showChangeLog	internal
showCitations	internal
showTopTable	internal
SimplifyContrastsExpression	internal
strstr	internal
tclArrayVar	internal
TclRequire	internal
Try	internal
TryReadImgProcFile	internal
UpDownOrBoth	internal
vennDiagramaffylmGUI	internal
VennDiagramPlot	internal
ViewContrastsMatrixAsPairs	internal
ViewContrastsMatrixInTable	internal
ViewExistingContrastParameterization	internal
ViewRNATargets	internal
