abundanceVDJ            Create an abundance graph for clonotype
                        expansion
addVDJtoSCE             Add 10X CellRanger V(D)J data to
                        SingleCellExperiment
barVDJ                  Create a bar graph for clonotype expansion
boxVDJ                  Create a box plot for diversity measures
calculateDiversity      Sample diversity estimation
clonoStats              Assign cell-level clonotypes and calculate
                        abundances
clonoStats-class        'clonoStats' object class
contigs                 SplitDataFrameList containing AIRR-seq (TCR)
                        data for six cells
pieVDJ                  Create a pie chart for clonotype expansion
readVDJcontigs          Load 10X CellRanger V(D)J data
runBreakaway            Clonotype richness estimation with Breakaway
runVDJPCA               Run PCA on clonotype abundance matrix
scatterVDJ              Create a scatterplot for diversity evenness and
                        abundance
splitClonotypes         Split cell-level clonotype counts by sample
summarizeClonotypes     Get sample-level clonotype counts
writeVDJcontigs         Write V(D)J contig data in 10X format
