bkc_bkb                 Background correction for the backbone markers
bkc_pe                  Background correction for the well-specific
                        markers (PE)
cluster.analysis        Cluster analysis with normalised backbone
                        measurements and the complete dataset
cluster.analysis.bkbOnly
                        Cluster analysis with normalised backbone
                        measurements
fcs_to_rds              Converting FCS files to RDS files
fcs_to_rds_bkb          Converting FCS files to RDS files (for the case
                        without exploratory markers)
imputation_bkb.predictors
                        Imputing the unmeasured well-specific markers
                        with regression models
initM                   Initial biological clusters
MapfxFFC                Normalising data from the Fluorescence Flow
                        Cytometry (FFC) Experiments with mapfx.norm
MapfxMPC                MAssively Parallel Flow cytometry Xplorer
                        (MAPFX)
mkImputeMT              Making the input for imputation
ord.fcs.raw.meta.df.out_ffc
                        Metadata of the example MPC data
ord.fcs.raw.meta.df.out_mpc
                        Metadata of the example FFC data
ord.fcs.raw.mt_ffc      Subset of the single-cell murine lung data at
                        steady state from an MPC experiment
ord.fcs.raw.mt_mpc      Subset of the sorted CD4+ and CD8+ T cells from
                        mice splenocytes from an FFC experiment
rmBatchEffect           Removing batch effect from the data (FFC)
rmWellEffect            Removing well effect from the data
