Package: GeoMxWorkflows
Title: GeoMx Digital Spatial Profiler (DSP) data analysis workflows
Description: Workflows for use with NanoString Technologies GeoMx Technology.  Package provides bioconductor focused workflows for leveraging existing packages (e.g. GeomxTools) to process, QC, and analyze the data.
Version: 1.19.0
Encoding: UTF-8
Authors@R: c(person("Maddy", "Griswold", email = "mgriswold@nanostring.com", role = c("cre", "aut")),
             person("Jason", "Reeves", role = c("aut")), 
             person("Prajan", "Divakar", email = "pdivakar@nanostring.com", role = c("aut")),
             person("Nicole", "Ortogero", email = "nortogero@nanostring.com", role = c("aut")),
             person("Zhi", "Yang", role = c("aut")),
             person("Stephanie", "Zimmerman", role = c("aut")),
             person("Rona", "Vitancol", email = "rvitancol@nanostring.com", role = c("aut")),
             person("David", "Henderson", role = c("aut")))
Depends: R (>= 4.0), NanoStringNCTools, GeomxTools
Imports: Biobase, S4Vectors, rjson, readxl, EnvStats, dplyr, reshape2,
        methods, utils, stats, data.table, outliers, BiocGenerics,
        ggplot2, ggrepel, ggforce, cowplot, scales, umap, Rtsne,
        pheatmap, BiocStyle, networkD3
Suggests: rmarkdown, knitr
License: MIT
BiocType: Workflow
biocViews: GeneExpressionWorkflow, ImmunoOncologyWorkflow,
        SpatialWorkflow
VignetteEngine: knitr::rmarkdown
VignetteBuilder: knitr
RoxygenNote: 7.2.3
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/GeoMxWorkflows
git_branch: devel
git_last_commit: 0697e35
git_last_commit_date: 2026-04-28
Repository: Bioconductor 3.24
Date/Publication: 2026-05-05
NeedsCompilation: no
Packaged: 2026-05-05 17:43:57 UTC; biocbuild
Author: Maddy Griswold [cre, aut],
  Jason Reeves [aut],
  Prajan Divakar [aut],
  Nicole Ortogero [aut],
  Zhi Yang [aut],
  Stephanie Zimmerman [aut],
  Rona Vitancol [aut],
  David Henderson [aut]
Maintainer: Maddy Griswold <mgriswold@nanostring.com>
