Title,Description,BiocVersion,Genome,SourceType,SourceUrl,SourceVersion,Species,TaxonomyId,Coordinate_1_based,DataProvider,Maintainer,RDataClass,DispatchClass,RDataPath,Tags
EM_id0001_Brain_CA1_hippocampus_region_5dTensor.Rds,"5D arrays with the binary label for the image segmentation. The 3D segmentation datasets of  Electron Microscopy (FIB-SEM) images with suvervised labels of mitocondoria, the CA1 hippocampus region of the mouse brain (1065x2048x1536 volume, approximately 5x5x5nm resolution). ",3.13,NA,PNG,https://github.com/kumeS/BioImageDbs,Mar 30 2017,Mus musculus,10090,NA,https://www.epfl.ch/labs/cvlab/data/data-em/,Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v01/EM_id0001_Brain_CA1_hippocampus_region_5dTensor.Rds,bioimage:segmentation:3D images:microscope:electron microscopy:scanning electron microscopy
EM_id0001_Brain_CA1_hippocampus_region_5dTensor_train_dataset.gif,A animation file (.gif) of the train dataset of EM_id0001_Brain_CA1_hippocampus_region_5dTensor.Rds.,3.13,NA,PNG,https://github.com/kumeS/BioImageDbs,Mar 30 2017,Mus musculus,10090,NA,https://www.epfl.ch/labs/cvlab/data/data-em/,Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v01/EM_id0001_Brain_CA1_hippocampus_region_5dTensor_train_dataset.gif,bioimage:segmentation:microscope:electron microscopy:scanning electron microscopy:animation
EM_id0002_Drosophila_brain_region_5dTensor.Rds,"5D arrays with the binary label for the image segmentation. The training and test datasets were two stacks of 30 sections from a serial section Transmission Electron Microscopy (ssTEM) data set of the Drosophila melanogaster first instar larva ventral nerve cord (VNC). The microcube measures 2 x 2 x 1.5 microns approx., with a resolution of 4x4x50 nm/pixel. The corresponding binary labels were provided in an in-out fashion, i.e. white for the pixels of segmented objects and black for the rest of pixels (which correspond mostly to membranes). But it does not include the ground truth of test dataset.",3.13,NA,PNG,https://github.com/kumeS/BioImageDbs,Feb 26 2019,Drosophila melanogaster,7227,NA,the ISBI 2012 Challenge dataset (https://academictorrents.com/details/42714f859770f1a9d8b27985f9f16ea17e8ba2f6),Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v01/EM_id0002_Drosophila_brain_region_5dTensor.Rds,bioimage:segmentation:3D image:microscope:electron microscopy:scanning electron microscopy
EM_id0002_Drosophila_brain_region_5dTensor_train_dataset.gif,A animation file (.gif) of the train dataset of EM_id0002_Drosophila_brain_region_5dTensor.Rds.,3.13,NA,PNG,https://github.com/kumeS/BioImageDbs,Feb 26 2019,Drosophila melanogaster,7227,NA,the ISBI 2012 Challenge dataset (https://academictorrents.com/details/42714f859770f1a9d8b27985f9f16ea17e8ba2f6),Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v01/EM_id0002_Drosophila_brain_region_5dTensor_train_dataset.gif,bioimage:segmentation:microscope:electron microscopy:scanning electron microscopy:animation
LM_id0001_DIC_C2DH_HeLa_4dTensor.Rds,"4D arrays with the multi-labels for the image segmentation. Human HeLa cells on a flat glass. The original dataset for 2D segmentation was provided by Dr. G. van Cappellen, Erasmus Medical Center, Rotterdam, The Netherlands. The dataset images were captured by the Zeiss LSM 510 Meta with the Objective lens, Plan-Apochromat 63x/1.4 (oil). The captured region was 0.19 x 0.19 microns, and the pixel size was 512x512 pixels per image. The time step was 10 min. To read them as the Rds file, the original tif images were converted to the PNG images with 8-bit/16-bit grey scale using ImageJ/Fiji.",3.13,NA,PNG,https://github.com/kumeS/BioImageDbs,Jan 15 2021,Homo sapiens,9606,NA,CELL TRACKING CHALLENGE (http://celltrackingchallenge.net/2d-datasets/),Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v01/LM_id0001_DIC_C2DH_HeLa_4dTensor.Rds,bioimage:segmentation:microscope:cell tracking
LM_id0001_DIC_C2DH_HeLa_4dTensor_train_dataset.gif,A animation file (.gif) of the train dataset of LM_id0001_DIC_C2DH_HeLa_4dTensor.Rds.,3.13,NA,PNG,https://github.com/kumeS/BioImageDbs,Jan 15 2021,Homo sapiens,9606,NA,CELL TRACKING CHALLENGE (http://celltrackingchallenge.net/2d-datasets/),Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v01/LM_id0001_DIC_C2DH_HeLa_4dTensor_train_dataset.gif,bioimage:segmentation:microscope:cell tracking:animation
LM_id0001_DIC_C2DH_HeLa_4dTensor_Binary.Rds,"4D arrays with the binary labels for the image segmentation. Human HeLa cells on a flat glass. The original dataset for 2D segmentation was provided by Dr. G. van Cappellen, Erasmus Medical Center, Rotterdam, The Netherlands. The dataset images were captured by the Zeiss LSM 510 Meta with the Objective lens, Plan-Apochromat 63x/1.4 (oil). The captured region was 0.19 x 0.19 microns, and the pixel size was 512x512 pixels per image. The time step was 10 min. To read them as the Rds file, the original tif images were converted to the PNG images with 8-bit/16-bit grey scale using ImageJ/Fiji.",3.13,NA,PNG,https://github.com/kumeS/BioImageDbs,Jan 15 2021,Homo sapiens,9606,NA,CELL TRACKING CHALLENGE (http://celltrackingchallenge.net/2d-datasets/),Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v01/LM_id0001_DIC_C2DH_HeLa_4dTensor_Binary.Rds,bioimage:segmentation:microscope:cell tracking
LM_id0001_DIC_C2DH_HeLa_4dTensor_Binary_train_dataset.gif,A animation file (.gif) of the train dataset of LM_id0001_DIC_C2DH_HeLa_4dTensor_Binary.Rds.,3.13,NA,PNG,https://github.com/kumeS/BioImageDbs,Jan 15 2021,Homo sapiens,9606,NA,CELL TRACKING CHALLENGE (http://celltrackingchallenge.net/2d-datasets/),Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v01/LM_id0001_DIC_C2DH_HeLa_4dTensor_Binary_train_dataset.gif,bioimage:segmentation:microscope:cell tracking:animation
LM_id0001_DIC_C2DH_HeLa_5dTensor.Rds,"5D arrays with the multi-labels for the image segmentation. Human HeLa cells on a flat glass. The original dataset for 2D segmentation was provided by Dr. G. van Cappellen, Erasmus Medical Center, Rotterdam, The Netherlands. The dataset images were captured by the Zeiss LSM 510 Meta with the Objective lens, Plan-Apochromat 63x/1.4 (oil). The captured region was 0.19 x 0.19 microns, and the pixel size was 512x512 pixels per image. The time step was 10 min. To read them as the Rds file, the original tif images were converted to the PNG images with 8-bit/16-bit grey scale using ImageJ/Fiji.",3.13,NA,PNG,https://github.com/kumeS/BioImageDbs,Jan 15 2021,Homo sapiens,9606,NA,CELL TRACKING CHALLENGE (http://celltrackingchallenge.net/2d-datasets/),Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v01/LM_id0001_DIC_C2DH_HeLa_5dTensor.Rds,bioimage:segmentation:microscope:cell tracking
LM_id0002_PhC_C2DH_U373_4dTensor.Rds,"4D arrays with the multi-labels for the image segmentation. Human glioblastoma-astrocytoma U373 cells on a polyacrylamide substrate. The original dataset for 2D segmentation was provided by Dr. S. Kumar, Department of Bioengineering, University of California at Berkeley, Berkeley CA (USA). The dataset images were captured by the Nikon microscope with the Objective lens, Plan Fluor DLL 20x/0.5. The captured region was 0.65 x 0.65 microns, and the pixel size was 696x520 pixels per image. The time step was 15 min. To convert them as the Rds file, the original tif images were converted to the PNG images with 8-bit/16-bit grey scale using ImageJ/Fiji.",3.13,NA,PNG,https://github.com/kumeS/BioImageDbs,Jan 15 2021,Homo sapiens,9606,NA,CELL TRACKING CHALLENGE (http://celltrackingchallenge.net/2d-datasets/),Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v01/LM_id0002_PhC_C2DH_U373_4dTensor.Rds,bioimage:segmentation:microscope:cell tracking
LM_id0002_PhC_C2DH_U373_4dTensor_train_dataset.gif,A animation file (.gif) of the train dataset of LM_id0002_PhC_C2DH_U373_4dTensor.Rds.,3.13,NA,PNG,https://github.com/kumeS/BioImageDbs,Jan 15 2021,Homo sapiens,9606,NA,CELL TRACKING CHALLENGE (http://celltrackingchallenge.net/2d-datasets/),Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v01/LM_id0002_PhC_C2DH_U373_4dTensor_train_dataset.gif,bioimage:segmentation:microscope:cell tracking:animation
LM_id0002_PhC_C2DH_U373_4dTensor_Binary.Rds,"4D arrays with the binary label for the image segmentation. Human glioblastoma-astrocytoma U373 cells on a polyacrylamide substrate. The original dataset for 2D segmentation was provided by Dr. S. Kumar, Department of Bioengineering, University of California at Berkeley, Berkeley CA (USA). The dataset images were captured by the Nikon microscope with the Objective lens, Plan Fluor DLL 20x/0.5. The captured region was 0.65 x 0.65 microns, and the pixel size was 696x520 pixels per image. The time step was 15 min. To convert them as the Rds file, the original tif images were converted to the PNG images with 8-bit/16-bit grey scale using ImageJ/Fiji.",3.13,NA,PNG,https://github.com/kumeS/BioImageDbs,Jan 15 2021,Homo sapiens,9606,NA,CELL TRACKING CHALLENGE (http://celltrackingchallenge.net/2d-datasets/),Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v01/LM_id0002_PhC_C2DH_U373_4dTensor_Binary.Rds,bioimage:segmentation:microscope:cell tracking
LM_id0002_PhC_C2DH_U373_4dTensor_Binary_train_dataset.gif,A animation file (.gif) of the train dataset of LM_id0002_PhC_C2DH_U373_4dTensor_Binary.Rds.,3.13,NA,PNG,https://github.com/kumeS/BioImageDbs,Jan 15 2021,Homo sapiens,9606,NA,CELL TRACKING CHALLENGE (http://celltrackingchallenge.net/2d-datasets/),Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v01/LM_id0002_PhC_C2DH_U373_4dTensor_Binary_train_dataset.gif,bioimage:segmentation:microscope:cell tracking:animation
LM_id0002_PhC_C2DH_U373_5dTensor.Rds,"5D arrays with the multi-labels for the image segmentation. Human glioblastoma-astrocytoma U373 cells on a polyacrylamide substrate. The original dataset for 2D segmentation was provided by Dr. S. Kumar, Department of Bioengineering, University of California at Berkeley, Berkeley CA (USA). The dataset images were captured by the Nikon microscope with the Objective lens, Plan Fluor DLL 20x/0.5. The captured region was 0.65 x 0.65 microns, and the pixel size was 696x520 pixels per image. The time step was 15 min. To convert them as the Rds file, the original tif images were converted to the PNG images with 8-bit/16-bit grey scale using ImageJ/Fiji.",3.13,NA,PNG,https://github.com/kumeS/BioImageDbs,Jan 15 2021,Homo sapiens,9606,NA,CELL TRACKING CHALLENGE (http://celltrackingchallenge.net/2d-datasets/),Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v01/LM_id0002_PhC_C2DH_U373_5dTensor.Rds,bioimage:segmentation:microscope:cell tracking
LM_id0003_Fluo_N2DH_GOWT1_4dTensor.Rds,"4D arrays with the multi-labels for the image segmentation. GFP-GOWT1 mouse stem cells. The original dataset for 2D segmentation was provided by Dr. E. B_rtov_, Institute of Biophysics, Academy of Sciences of the Czech Republic, Brno, Czech Republic. The dataset images were captured by the Leica TCS SP5 with the Objective lens, Plan-Apochromat 63x/1.4 (oil). The captured region was 0.240 x 0.240 microns, and the pixel size was 1024x1024 pixels per image. The time step was 5 min. To convert them as the Rds file, the original tif images were converted to the PNG images with 8-bit/16-bit grey scale using ImageJ/Fiji.",3.13,NA,PNG,https://github.com/kumeS/BioImageDbs,Jan 15 2021,Mus musculus,10090,NA,CELL TRACKING CHALLENGE (http://celltrackingchallenge.net/2d-datasets/),Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v01/LM_id0003_Fluo_N2DH_GOWT1_4dTensor.Rds,bioimage:segmentation:microscope:cell tracking
LM_id0003_Fluo_N2DH_GOWT1_4dTensor_train_dataset.gif,A animation file (.gif) of the train dataset of LM_id0003_Fluo_N2DH_GOWT1_4dTensor.Rds.,3.13,NA,PNG,https://github.com/kumeS/BioImageDbs,Jan 15 2021,Mus musculus,10090,NA,CELL TRACKING CHALLENGE (http://celltrackingchallenge.net/2d-datasets/),Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v01/LM_id0003_Fluo_N2DH_GOWT1_4dTensor_train_dataset.gif,bioimage:segmentation:microscope:cell tracking:animation
LM_id0003_Fluo_N2DH_GOWT1_4dTensor_Binary.Rds,"4D arrays with the binary label for the image segmentation. GFP-GOWT1 mouse stem cells. The original dataset for 2D segmentation was provided by Dr. E. B_rtov_, Institute of Biophysics, Academy of Sciences of the Czech Republic, Brno, Czech Republic. The dataset images were captured by the Leica TCS SP5 with the Objective lens, Plan-Apochromat 63x/1.4 (oil). The captured region was 0.240 x 0.240 microns, and the pixel size was 1024x1024 pixels per image. The time step was 5 min. To convert them as the Rds file, the original tif images were converted to the PNG images with 8-bit/16-bit grey scale using ImageJ/Fiji.",3.13,NA,PNG,https://github.com/kumeS/BioImageDbs,Jan 15 2021,Mus musculus,10090,NA,CELL TRACKING CHALLENGE (http://celltrackingchallenge.net/2d-datasets/),Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v01/LM_id0003_Fluo_N2DH_GOWT1_4dTensor_Binary.Rds,bioimage:segmentation:microscope:cell tracking
LM_id0003_Fluo_N2DH_GOWT1_4dTensor_Binary_train_dataset.gif,A animation file (.gif) of the train dataset of LM_id0003_Fluo_N2DH_GOWT1_4dTensor_Binary.Rds.,3.13,NA,PNG,https://github.com/kumeS/BioImageDbs,Jan 15 2021,Mus musculus,10090,NA,CELL TRACKING CHALLENGE (http://celltrackingchallenge.net/2d-datasets/),Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v01/LM_id0003_Fluo_N2DH_GOWT1_4dTensor_Binary_train_dataset.gif,bioimage:segmentation:microscope:cell tracking:animation
LM_id0003_Fluo_N2DH_GOWT1_5dTensor.Rds,"5D arrays with the multi-labels for the image segmentation. GFP-GOWT1 mouse stem cells. The original dataset for 2D segmentation was provided by Dr. E. B_rtov_, Institute of Biophysics, Academy of Sciences of the Czech Republic, Brno, Czech Republic. The dataset images were captured by the Leica TCS SP5 with the Objective lens, Plan-Apochromat 63x/1.4 (oil). The captured region was 0.240 x 0.240 microns, and the pixel size was 1024x1024 pixels per image. The time step was 5 min. To convert them as the Rds file, the original tif images were converted to the PNG images with 8-bit/16-bit grey scale using ImageJ/Fiji.",3.13,NA,PNG,https://github.com/kumeS/BioImageDbs,Jan 15 2021,Mus musculus,10090,NA,CELL TRACKING CHALLENGE (http://celltrackingchallenge.net/2d-datasets/),Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v01/LM_id0003_Fluo_N2DH_GOWT1_5dTensor.Rds,bioimage:segmentation:microscope:cell tracking
EM_id0003_J558L_4dTensor.Rds,The mouse B myeloma cell line J558L derived from a BALB/c strain. Ultra-thin (approx. 90 nm) sections were examined in a Philips/FEI CM10 (80 kV) electron microscope equipped with a Bio-scan Camera Model 792. Images were recorded with Digital Micrograph softwwere (Gatan). The imaging magnification was x5800.,3.13,NA,PNG,https://github.com/kumeS/BioImageDbs,Aug 27 2011,Mus musculus,10090,NA,"Pattern Recognition and Image Processing, University of Freiburg. (https://lmb.informatik.uni-freiburg.de/resources/datasets/tem.en.html)",Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v01/EM_id0003_J558L_4dTensor.Rds,bioimage:segmentation:2D images:microscope:electron microscopy:transmission electron microscopy
EM_id0003_J558L_4dTensor_train_dataset.gif,A animation file (.gif) of the train dataset of EM_id0003_J558L_4dTensor.Rds,3.13,NA,PNG,https://github.com/kumeS/BioImageDbs,Aug 27 2011,Mus musculus,10090,NA,"Pattern Recognition and Image Processing, University of Freiburg. (https://lmb.informatik.uni-freiburg.de/resources/datasets/tem.en.html)",Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v01/EM_id0003_J558L_4dTensor_train_dataset.gif,bioimage:segmentation:2D images:microscope:electron microscopy:transmission electron microscopy
EM_id0004_PrHudata_4dTensor.Rds,The primary human T cell isolated from peripheral blood mononuclear cells (PBMCs). The purity of the isolated cell fraction was determined by anti-CD3 staining and was 96%. Ultra-thin (approx. 90 nm) sections were examined in a Philips/FEI CM10 (80 kV) electron microscope equipped with a Bio-scan Camera Model 792. Images were recorded with Digital Micrograph softwwere (Gatan).  The imaging magnification was x10500-34000.,3.13,NA,PNG,https://github.com/kumeS/BioImageDbs,Aug 28 2011,Homo sapiens,9606,NA,"Pattern Recognition and Image Processing, University of Freiburg. (https://lmb.informatik.uni-freiburg.de/resources/datasets/tem.en.html)",Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v01/EM_id0004_PrHudata_4dTensor.Rds,bioimage:segmentation:2D images:microscope:electron microscopy:transmission electron microscopy
EM_id0004_PrHudata_4dTensor_train_dataset.gif,A animation file (.gif) of the train dataset of EM_id0004_PrHudata_4dTensor.Rds,3.13,NA,PNG,https://github.com/kumeS/BioImageDbs,Aug 28 2011,Homo sapiens,9606,NA,"Pattern Recognition and Image Processing, University of Freiburg. (https://lmb.informatik.uni-freiburg.de/resources/datasets/tem.en.html)",Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v01/EM_id0004_PrHudata_4dTensor_train_dataset.gif,bioimage:segmentation:2D images:microscope:electron microscopy:transmission electron microscopy
EM_id0005_Mouse_Kidney_2D_All_Mito_512_4dTensor.Rds,"4D arrays with the single label of mitocondoria for the image segmentation. The mouse kidney section was examined in a scanning electron microscope with the detection of backscattered electron. The imaging magnification was x4000 (about 5.9 nm/px). To convert them as the Rds file, the images were resized to be 512x512 pixels during the processing.",3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Mus musculus,10090,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v02/EM_id0005_Mouse_Kidney_2D_All_Mito_512_4dTensor.Rds,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0005_Mouse_Kidney_2D_All_Mito_512_4dTensor_dataset.gif,A animation file (.gif) of the dataset of EM_id0005_Mouse_Kidney_2D_All_Mito_512_4dTensor.Rds,3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Mus musculus,10090,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v02/EM_id0005_Mouse_Kidney_2D_All_Mito_512_4dTensor_dataset.gif,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0005_Mouse_Kidney_2D_All_Mito_1024_4dTensor.Rds,"4D arrays with the single label of mitocondoria for the image segmentation. The mouse kidney section was examined in a scanning electron microscope with the detection of backscattered electron. The imaging magnification was x4000 (about 5.9 nm/px). To convert them as the Rds file, the images were resized to be 1024x1024 pixels during the processing.",3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Mus musculus,10090,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v02/EM_id0005_Mouse_Kidney_2D_All_Mito_1024_4dTensor.Rds,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0005_Mouse_Kidney_2D_All_Mito_1024_4dTensor_dataset.gif,A animation file (.gif) of the dataset of EM_id0005_Mouse_Kidney_2D_All_Mito_1024_4dTensor.Rds,3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Mus musculus,10090,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v02/EM_id0005_Mouse_Kidney_2D_All_Mito_1024_4dTensor_dataset.gif,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0005_Mouse_Kidney_2D_All_Nuc_1024_4dTensor.Rds,"4D arrays with the single label of nucleus for the image segmentation. The mouse kidney section was examined in a scanning electron microscope with the detection of backscattered electron. The imaging magnification was x4000 (about 5.9 nm/px). To convert them as the Rds file, the images were resized to be 1024x1024 pixels during the processing.",3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Mus musculus,10090,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v02/EM_id0005_Mouse_Kidney_2D_All_Nuc_1024_4dTensor.Rds,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0005_Mouse_Kidney_2D_All_Nuc_1024_4dTensor_dataset.gif,A animation file (.gif) of the dataset of EM_id0005_Mouse_Kidney_2D_All_Nuc_1024_4dTensor.Rds,3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Mus musculus,10090,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v02/EM_id0005_Mouse_Kidney_2D_All_Nuc_1024_4dTensor_dataset.gif,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0005_Mouse_Kidney_2D_WideEM_Mouse_Kidney_Fused_Img_126_190725cut_4dtensor.Rds,"4D arrays with non-labels for the image segmentation. The mouse kidney section was examined in a scanning electron microscope with the detection of backscattered electron. The imaging magnification was x4000 (about 5.9 nm/px). To convert them as the Rds file, the images were resized to be 1024x1024 pixels during the processing. The dataset of crop_x1024 consisted of 28 x 23 tiles. The dataset of crop_x2048 consisted of 14 x 11 tiles.",3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Mus musculus,10090,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v02/EM_id0005_Mouse_Kidney_2D_WideEM_Mouse_Kidney_Fused_Img_126_190725cut_4dtensor.Rds,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0006_Rat_Liver_2D_All_Mito_256_4dTensor.Rds,"4D arrays with the single label of mitocondoria for the image segmentation. The rat liver section was examined in a scanning electron microscope with the detection of backscattered electron. The imaging magnification was x7500 (about 12 nm/px). To convert them as the Rds file, the images were resized to be 256x256 pixels during the processing.",3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Rattus norvegicus,10116,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v02/EM_id0006_Rat_Liver_2D_All_Mito_256_4dTensor.Rds,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0006_Rat_Liver_2D_All_Mito_256_4dTensor_dataset.gif,A animation file (.gif) of the dataset of EM_id0006_Rat_Liver_2D_All_Mito_256_4dTensor.Rds,3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Rattus norvegicus,10116,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v02/EM_id0006_Rat_Liver_2D_All_Mito_256_4dTensor_dataset.gif,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0006_Rat_Liver_2D_All_Mito_512_4dTensor.Rds,"4D arrays with the single label of mitocondoria for the image segmentation. The rat liver section was examined in a scanning electron microscope with the detection of backscattered electron. The imaging magnification was x7500 (about 12 nm/px). To convert them as the Rds file, the images were resized to be 512x512 pixels during the processing.",3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Rattus norvegicus,10116,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v02/EM_id0006_Rat_Liver_2D_All_Mito_512_4dTensor.Rds,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0006_Rat_Liver_2D_All_Mito_512_4dTensor_dataset.gif,A animation file (.gif) of the dataset of EM_id0006_Rat_Liver_2D_All_Mito_512_4dTensor.Rds,3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Rattus norvegicus,10116,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v02/EM_id0006_Rat_Liver_2D_All_Mito_512_4dTensor_dataset.gif,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0006_Rat_Liver_2D_All_Mito_1024_4dTensor.Rds,"4D arrays with the single label of mitocondoria for the image segmentation. The rat liver section was examined in a scanning electron microscope with the detection of backscattered electron. The imaging magnification was x7500 (about 12 nm/px). To convert them as the Rds file, the images were resized to be 1024x1024 pixels during the processing.",3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Rattus norvegicus,10116,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v02/EM_id0006_Rat_Liver_2D_All_Mito_1024_4dTensor.Rds,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0006_Rat_Liver_2D_All_Mito_1024_4dTensor_dataset.gif,A animation file (.gif) of the dataset of EM_id0006_Rat_Liver_2D_All_Mito_1024_4dTensor.Rds,3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Rattus norvegicus,10116,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v02/EM_id0006_Rat_Liver_2D_All_Mito_1024_4dTensor_dataset.gif,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0006_Rat_Liver_2D_All_Nuc_1024_4dTensor.Rds,"4D arrays with the single label of nucleus for the image segmentation. The rat liver section was examined in a scanning electron microscope with the detection of backscattered electron. The imaging magnification was x7500 (about 12 nm/px). To convert them as the Rds file, the images were resized to be 1024x1024 pixels during the processing.",3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Rattus norvegicus,10116,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v02/EM_id0006_Rat_Liver_2D_All_Nuc_1024_4dTensor.Rds,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0006_Rat_Liver_2D_All_Nuc_1024_4dTensor_dataset.gif,A animation file (.gif) of the dataset of EM_id0006_Rat_Liver_2D_All_Nuc_1024_4dTensor.Rds,3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Rattus norvegicus,10116,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v02/EM_id0006_Rat_Liver_2D_All_Nuc_1024_4dTensor_dataset.gif,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0006_Rat_Liver_2D_WideEM_Rat_Liver_NCMIR_001_160408_1_1185_4dtensor.Rds,"4D arrays with non-labels for the image segmentation. The rat liver section was examined in a scanning electron microscope with the detection of backscattered electron. The imaging magnification was x7500 (about 12 nm/px). To convert them as the Rds file, the images were resized to be 1024x1024 pixels during the processing. The dataset of crop_x1024 consisted of 82 x 11 tiles. The dataset of crop_x2048 consisted of 41 x 5 tiles.",3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Rattus norvegicus,10116,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v02/EM_id0006_Rat_Liver_2D_WideEM_Rat_Liver_NCMIR_001_160408_1_1185_4dtensor.Rds,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0006_Rat_Liver_2D_WideEM_Rat_Liver_NCMIR_001_160408_1186_2370_4dtensor.Rds,"4D arrays with non-labels for the image segmentation. The rat liver section was examined in a scanning electron microscope with the detection of backscattered electron. The imaging magnification was x7500 (about 12 nm/px). To convert them as the Rds file, the images were resized to be 1024x1024 pixels during the processing. The dataset of crop_x1024 consisted of 82 x 11 tiles. The dataset of crop_x2048 consisted of 41 x 5 tiles.",3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Rattus norvegicus,10116,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v02/EM_id0006_Rat_Liver_2D_WideEM_Rat_Liver_NCMIR_001_160408_1186_2370_4dtensor.Rds,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0007_Mouse_Kidney_MultiScale_All_High_Gap_1024_4dTensor.Rds,"4D arrays with the single label of non-cell area for the image segmentation. The mouse kidney section was examined in a scanning electron microscope with the detection of backscattered electron. The imaging magnification was x4000 (about 5.9 nm/px). To convert them as the Rds file, the images (1000x1000 pixels) were resized to be 1024x1024 pixels during the processing.",3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Mus musculus,10090,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v02/EM_id0007_Mouse_Kidney_MultiScale_All_High_Gap_1024_4dTensor.Rds,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0007_Mouse_Kidney_MultiScale_All_High_Gap_1024_4dTensor_dataset.gif,A animation file (.gif) of the dataset of EM_id0007_Mouse_Kidney_MultiScale_All_High_Gap_1024_4dTensor.Rds,3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Mus musculus,10090,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v02/EM_id0007_Mouse_Kidney_MultiScale_All_High_Gap_1024_4dTensor_dataset.gif,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0007_Mouse_Kidney_MultiScale_All_High_Mito_1024_4dTensor.Rds,"4D arrays with the single label of mitochondria for the image segmentation. The mouse kidney section was examined in a scanning electron microscope with the detection of backscattered electron. The imaging magnification was x4000 (about 5.9 nm/px). To convert them as the Rds file, the images (1000x1000 pixels) were resized to be 1024x1024 pixels during the processing.",3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Mus musculus,10090,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v02/EM_id0007_Mouse_Kidney_MultiScale_All_High_Mito_1024_4dTensor.Rds,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0007_Mouse_Kidney_MultiScale_All_High_Mito_1024_4dTensor_dataset.gif,A animation file (.gif) of the dataset of EM_id0007_Mouse_Kidney_MultiScale_All_High_Mito_1024_4dTensor.Rds,3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Mus musculus,10090,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v02/EM_id0007_Mouse_Kidney_MultiScale_All_High_Mito_1024_4dTensor_dataset.gif,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0007_Mouse_Kidney_MultiScale_All_High_Nuc_1024_4dTensor.Rds,"4D arrays with the single label of nucleus for the image segmentation. The mouse kidney section was examined in a scanning electron microscope with the detection of backscattered electron. The imaging magnification was x4000 (about 5.9 nm/px). To convert them as the Rds file, the images (1000x1000 pixels) were resized to be 1024x1024 pixels during the processing.",3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Mus musculus,10090,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v02/EM_id0007_Mouse_Kidney_MultiScale_All_High_Nuc_1024_4dTensor.Rds,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0007_Mouse_Kidney_MultiScale_All_High_Nuc_1024_4dTensor_dataset.gif,A animation file (.gif) of the dataset of EM_id0007_Mouse_Kidney_MultiScale_All_High_Nuc_1024_4dTensor.Rds,3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Mus musculus,10090,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v02/EM_id0007_Mouse_Kidney_MultiScale_All_High_Nuc_1024_4dTensor_dataset.gif,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0007_Mouse_Kidney_MultiScale_All_Middle_Fibroblast_1024_4dTensor.Rds,"4D arrays with the single label of fibroblast for the image segmentation. The mouse kidney section was examined in a scanning electron microscope with the detection of backscattered electron. The imaging magnification was x4000 (about 5.9 nm/px). To convert them as the Rds file, the images (3000x3000 pixels) were resized to be 1024x1024 pixels during the processing.",3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Mus musculus,10090,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v02/EM_id0007_Mouse_Kidney_MultiScale_All_Middle_Fibroblast_1024_4dTensor.Rds,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0007_Mouse_Kidney_MultiScale_All_Middle_Fibroblast_1024_4dTensor_dataset.gif,A animation file (.gif) of the dataset of EM_id0007_Mouse_Kidney_MultiScale_All_Middle_Fibroblast_1024_4dTensor.Rds,3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Mus musculus,10090,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v02/EM_id0007_Mouse_Kidney_MultiScale_All_Middle_Fibroblast_1024_4dTensor_dataset.gif,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0007_Mouse_Kidney_MultiScale_All_Middle_Podocyte_1024_4dTensor.Rds,"4D arrays with the single label of podocyte for the image segmentation. The mouse kidney section was examined in a scanning electron microscope with the detection of backscattered electron. The imaging magnification was x4000 (about 5.9 nm/px). To convert them as the Rds file, the images (3000x3000 pixels) were resized to be 1024x1024 pixels during the processing.",3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Mus musculus,10090,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v02/EM_id0007_Mouse_Kidney_MultiScale_All_Middle_Podocyte_1024_4dTensor.Rds,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0007_Mouse_Kidney_MultiScale_All_Middle_Podocyte_1024_4dTensor_dataset.gif,A animation file (.gif) of the dataset of EM_id0007_Mouse_Kidney_MultiScale_All_Middle_Podocyte_1024_4dTensor.Rds,3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Mus musculus,10090,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v02/EM_id0007_Mouse_Kidney_MultiScale_All_Middle_Podocyte_1024_4dTensor_dataset.gif,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0007_Mouse_Kidney_MultiScale_All_Low_Uriniferous_Tubule_1024_4dTensor.Rds,"4D arrays with the single label of uriniferous tubule for the image segmentation. The mouse kidney section was examined in a scanning electron microscope with the detection of backscattered electron. The imaging magnification was x4000 (about 5.9 nm/px). To convert them as the Rds file, the images (10000x10000 pixels) were resized to be 1024x1024 pixels during the processing.",3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Mus musculus,10090,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v02/EM_id0007_Mouse_Kidney_MultiScale_All_Low_Uriniferous_Tubule_1024_4dTensor.Rds,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0007_Mouse_Kidney_MultiScale_All_Low_Uriniferous_Tubule_1024_4dTensor_dataset.gif,A animation file (.gif) of the dataset of EM_id0007_Mouse_Kidney_MultiScale_All_Low_Uriniferous_Tubule_1024_4dTensor.Rds,3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Mus musculus,10090,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v02/EM_id0007_Mouse_Kidney_MultiScale_All_Low_Uriniferous_Tubule_1024_4dTensor_dataset.gif,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0007_Mouse_Kidney_MultiScale_All_Low_Glomerulus_1024_4dTensor.Rds,"4D arrays with the single label of glomerulus for the image segmentation. The mouse kidney section was examined in a scanning electron microscope with the detection of backscattered electron. The imaging magnification was x4000 (about 5.9 nm/px). To convert them as the Rds file, the images (10000x10000 pixels) were resized to be 1024x1024 pixels during the processing.",3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Mus musculus,10090,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v02/EM_id0007_Mouse_Kidney_MultiScale_All_Low_Glomerulus_1024_4dTensor.Rds,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0007_Mouse_Kidney_MultiScale_All_Low_Glomerulus_1024_4dTensor_dataset.gif,A animation file (.gif) of the dataset of EM_id0007_Mouse_Kidney_MultiScale_All_Low_Glomerulus_1024_4dTensor.Rds,3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Mus musculus,10090,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v02/EM_id0007_Mouse_Kidney_MultiScale_All_Low_Glomerulus_1024_4dTensor_dataset.gif,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0008_Human_NB4_2D_All_Cel_512_4dTensor.Rds,"4D arrays with the single label of cell body for the image segmentation. The section of human NB-4 cell (Human Leukemia, pre B-cell, cell line) was examined in a scanning electron microscope with the detection of backscattered electron. The acceleration voltage was 6-7kV and the working distance was 4 mm. The imaging magnification was x4000 (about 5.9-11.8 nm/px). To convert them as the Rds file, the images were resized to be 512x512 pixels during the processing.",3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Homo sapiens,9606,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v02/EM_id0008_Human_NB4_2D_All_Cel_512_4dTensor.Rds,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0008_Human_NB4_2D_All_Cel_512_4dTensor_dataset.gif,A animation file (.gif) of the dataset of EM_id0008_Human_NB4_2D_All_Cel_512_4dTensor.Rds,3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Homo sapiens,9606,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v02/EM_id0008_Human_NB4_2D_All_Cel_512_4dTensor_dataset.gif,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0008_Human_NB4_2D_All_Mito_512_4dTensor.Rds,"4D arrays with the single label of mitochondria for the image segmentation. The section of human NB-4 cell (Human Leukemia, pre B-cell, cell line) was examined in a scanning electron microscope with the detection of backscattered electron. The acceleration voltage was 6-7kV and the working distance was 4 mm. The imaging magnification was x4000 (about 5.9-11.8 nm/px). To convert them as the Rds file, the images were resized to be 512x512 pixels during the processing.",3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Homo sapiens,9606,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v02/EM_id0008_Human_NB4_2D_All_Mito_512_4dTensor.Rds,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0008_Human_NB4_2D_All_Mito_512_4dTensor_dataset.gif,A animation file (.gif) of the dataset of EM_id0008_Human_NB4_2D_All_Mito_512_4dTensor.Rds,3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Homo sapiens,9606,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v02/EM_id0008_Human_NB4_2D_All_Mito_512_4dTensor_dataset.gif,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0008_Human_NB4_2D_All_Nuc_crop512_4dTensor.Rds,"4D arrays with the single label of nucleus for the image segmentation. The section of human NB-4 cell (Human Leukemia, pre B-cell, cell line) was examined in a scanning electron microscope with the detection of backscattered electron. The acceleration voltage was 6-7kV and the working distance was 4 mm. The imaging magnification was x4000 (about 5.9-11.8 nm/px). To convert them as the Rds file, the images were resized to be 512x512 (cropped images) pixels during the processing.",3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Homo sapiens,9606,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v02/EM_id0008_Human_NB4_2D_All_Nuc_crop512_4dTensor.Rds,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0008_Human_NB4_2D_All_Nuc_crop512_4dTensor_dataset.gif,A animation file (.gif) of the dataset of EM_id0008_Human_NB4_2D_All_Nuc_crop512_4dTensor.Rds,3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Homo sapiens,9606,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v02/EM_id0008_Human_NB4_2D_All_Nuc_crop512_4dTensor_dataset.gif,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0008_Human_NB4_2D_All_Nuc_512_4dTensor.Rds,"4D arrays with the single label of nucleus for the image segmentation. The section of human NB-4 cell (Human Leukemia, pre B-cell, cell line) was examined in a scanning electron microscope with the detection of backscattered electron. The acceleration voltage was 6-7kV and the working distance was 4 mm. The imaging magnification was x4000 (about 5.9-11.8 nm/px). To convert them as the Rds file, the images were resized to be 512x512 pixels during the processing.",3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Homo sapiens,9606,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v02/EM_id0008_Human_NB4_2D_All_Nuc_512_4dTensor.Rds,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0008_Human_NB4_2D_All_Nuc_512_4dTensor_dataset.gif,A animation file (.gif) of the dataset of EM_id0008_Human_NB4_2D_All_Nuc_512_4dTensor.Rds,3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Homo sapiens,9606,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v02/EM_id0008_Human_NB4_2D_All_Nuc_512_4dTensor_dataset.gif,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0008_Human_NB4_2D_All_Nuc_1024_4dTensor.Rds,"4D arrays with the single label of nucleus for the image segmentation. The section of human NB-4 cell (Human Leukemia, pre B-cell, cell line) was examined in a scanning electron microscope with the detection of backscattered electron. The acceleration voltage was 6-7kV and the working distance was 4 mm. The imaging magnification was x4000 (about 5.9-11.8 nm/px). To convert them as the Rds file, the images were resized to be 1024x1024 pixels during the processing.",3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Homo sapiens,9606,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v02/EM_id0008_Human_NB4_2D_All_Nuc_1024_4dTensor.Rds,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0008_Human_NB4_2D_All_Nuc_1024_4dTensor_dataset.gif,A animation file (.gif) of the dataset of EM_id0008_Human_NB4_2D_All_Nuc_1024_4dTensor.Rds,3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Homo sapiens,9606,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v02/EM_id0008_Human_NB4_2D_All_Nuc_1024_4dTensor_dataset.gif,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0008_Human_NB4_2D_WideEM_NB4_097_01_4dtensor.Rds,"4D arrays with non-labels for the image segmentation. The section of human NB-4 cell (Human Leukemia, pre B-cell, cell line) was examined in a scanning electron microscope with the detection of backscattered electron. The imaging magnification was x4000 (about 11.8 nm/px). To convert them as the Rds file, the images were resized to be 1024x1024 pixels during the processing. The dataset of crop_x1024 consisted of 40 x 16 tiles. The dataset of crop_x2048 consisted of 20 x 8 tiles.",3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Homo sapiens,9606,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v02/EM_id0008_Human_NB4_2D_WideEM_NB4_097_01_4dtensor.Rds,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0008_Human_NB4_2D_WideEM_NB4_097_02_4dtensor.Rds,"4D arrays with non-labels for the image segmentation. The section of human NB-4 cell (Human Leukemia, pre B-cell, cell line) was examined in a scanning electron microscope with the detection of backscattered electron. The imaging magnification was x4000 (about 11.8 nm/px). To convert them as the Rds file, the images were resized to be 1024x1024 pixels during the processing. The dataset of crop_x1024 consisted of 40 x 15 tiles. The dataset of crop_x2048 consisted of 20 x 7 tiles.",3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Homo sapiens,9606,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v02/EM_id0008_Human_NB4_2D_WideEM_NB4_097_02_4dtensor.Rds,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0008_Human_NB4_2D_WideEM_NB4_127_4dtensor.Rds,"4D arrays with non-labels for the image segmentation. The section of human NB-4 cell (Human Leukemia, pre B-cell, cell line) was examined in a scanning electron microscope with the detection of backscattered electron. The acceleration voltage was 6kV and the working distance was 4 mm. The imaging magnification was x4000 (about 5.9 nm/px). To convert them as the Rds file, the images were resized to be 1024x1024 pixels during the processing. The dataset of crop_x1024 consisted of 15 x 12 tiles. The dataset of crop_x2048 consisted of 7 x 6 tiles.",3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Sep 01 2021,Homo sapiens,9606,NA,Satoshi Kume <satoshi.kume.1984@gmail.com>,Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v02/EM_id0008_Human_NB4_2D_WideEM_NB4_127_4dtensor.Rds,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0009_MurineBMMC_All_512_4dTensor.Rds,"4D arrays with the multi-labels for the image segmentation. The section of murine bone marrow derived-mast cells was examined in a Philips/FEI CM10 (80 kV) electron microscope equipped with a Bio-scan Camera Model 792. Images were recorded with Digital Micrograph softwwere (Gatan). The imaging magnification was x5800. To convert them as the Rds file, the images were resized to be 512x512 pixels during the processing.",3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Mar 10 2011,Mus musculus,10090,NA,"Pattern Recognition and Image Processing, University of Freiburg. (https://lmb.informatik.uni-freiburg.de/resources/datasets/tem.en.html)",Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v02/EM_id0009_MurineBMMC_All_512_4dTensor.Rds,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0009_MurineBMMC_All_512_4dTensor_dataset.gif,A animation file (.gif) of the dataset of EM_id0009_MurineBMMC_All_512_4dTensor.Rds,3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Mar 10 2011,Mus musculus,10090,NA,"Pattern Recognition and Image Processing, University of Freiburg. (https://lmb.informatik.uni-freiburg.de/resources/datasets/tem.en.html)",Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v02/EM_id0009_MurineBMMC_All_512_4dTensor_dataset.gif,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0010_HumanBlast_All_512_4dTensor.Rds,"4D arrays with the multi-labels for the image segmentation. The section of primary human T cells from blood of a healthy donor and phytohemagglutinin/IL-2 expanded human T cells (T cell blasts) was examined in a Philips/FEI CM10 (80 kV) electron microscope equipped with a Bio-scan Camera Model 792. Images were recorded with Digital Micrograph softwwere (Gatan). The imaging magnification was x5800. To convert them as the Rds file, the images were resized to be 512x512 pixels during the processing.",3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Aug 27 2011,Homo sapiens,9606,NA,"Pattern Recognition and Image Processing, University of Freiburg. (https://lmb.informatik.uni-freiburg.de/resources/datasets/tem.en.html)",Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v02/EM_id0010_HumanBlast_All_512_4dTensor.Rds,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0010_HumanBlast_All_512_4dTensor_dataset.gif,A animation file (.gif) of the dataset of EM_id0010_HumanBlast_All_512_4dTensor.Rds,3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Aug 27 2011,Homo sapiens,9606,NA,"Pattern Recognition and Image Processing, University of Freiburg. (https://lmb.informatik.uni-freiburg.de/resources/datasets/tem.en.html)",Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v02/EM_id0010_HumanBlast_All_512_4dTensor_dataset.gif,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0011_HumanJurkat_All_512_4dTensor.Rds,"4D arrays with the multi-labels for the image segmentation. The section of human T-cell line Jurkat was examined in a Philips/FEI CM10 (80 kV) electron microscope equipped with a Bio-scan Camera Model 792. Images were recorded with Digital Micrograph softwwere (Gatan). The imaging magnification was x4600. To convert them as the Rds file, the images were resized to be 512x512 pixels during the processing.",3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Mar 10 2011,Homo sapiens,9606,NA,"Pattern Recognition and Image Processing, University of Freiburg. (https://lmb.informatik.uni-freiburg.de/resources/datasets/tem.en.html)",Satoshi Kume <satoshi.kume.1984@gmail.com>,List,Rds,BioImageDbs/v02/EM_id0011_HumanJurkat_All_512_4dTensor.Rds,bioimage:segmentation:2D images:microscope:electron microscopy
EM_id0011_HumanJurkat_All_512_4dTensor_dataset.gif,A animation file (.gif) of the dataset of EM_id0011_HumanJurkat_All_512_4dTensor.Rds,3.14,NA,PNG,https://github.com/kumeS/BioImageDbs,Mar 10 2011,Homo sapiens,9606,NA,"Pattern Recognition and Image Processing, University of Freiburg. (https://lmb.informatik.uni-freiburg.de/resources/datasets/tem.en.html)",Satoshi Kume <satoshi.kume.1984@gmail.com>,magick-image,FilePath,BioImageDbs/v02/EM_id0011_HumanJurkat_All_512_4dTensor_dataset.gif,bioimage:segmentation:2D images:microscope:electron microscopy