Date: 2026-04-30

# The BioImageBbs Datasets

Satoshi Kume*

*satoshi.kume.1984@gmail.com

#### 2026-04-30

#### Package

BioImageDbs, magick

Last modified: NA
Compiled: 2026-04-30 11:26:25.280265

# 1 Fetch Bioimage Datasets from ExperimentHub

The `BioImageDbs` package provides the metadata for bioimage datasets, which is preprocessed as array format and saved in ExperimentHub.

# 2 ExperimentHub package

First we load/update the `ExperimentHub` resource.

    library(ExperimentHub)
    eh <- ExperimentHub()

# 3 Simaple query

We can retrieve only the BioImageDbs tibble files as follows.

    qr <- query(eh, c("BioImageDbs"))
    qr

    ## ExperimentHub with 73 records
    ## # snapshotDate(): 2026-04-23
    ## # $dataprovider: Satoshi Kume <satoshi.kume.1984@gmail.com>, CELL TRACKING C...
    ## # $species: Mus musculus, Homo sapiens, Rattus norvegicus, Drosophila melano...
    ## # $rdataclass: List, magick-image
    ## # additional mcols(): taxonomyid, genome, description,
    ## #   coordinate_1_based, maintainer, rdatadateadded, preparerclass, tags,
    ## #   rdatapath, sourceurl, sourcetype
    ## # retrieve records with, e.g., 'object[["EH6874"]]'
    ##
    ##            title
    ##   EH6874 | EM_id0001_Brain_CA1_hippocampus_region_5dTensor.Rds
    ##   EH6875 | EM_id0001_Brain_CA1_hippocampus_region_5dTensor_train_dataset.gif
    ##   EH6876 | EM_id0002_Drosophila_brain_region_5dTensor.Rds
    ##   EH6877 | EM_id0002_Drosophila_brain_region_5dTensor_train_dataset.gif
    ##   EH6878 | LM_id0001_DIC_C2DH_HeLa_4dTensor.Rds
    ##   ...      ...
    ##   EH6942 | EM_id0009_MurineBMMC_All_512_4dTensor_dataset.gif
    ##   EH6943 | EM_id0010_HumanBlast_All_512_4dTensor.Rds
    ##   EH6944 | EM_id0010_HumanBlast_All_512_4dTensor_dataset.gif
    ##   EH6945 | EM_id0011_HumanJurkat_All_512_4dTensor.Rds
    ##   EH6946 | EM_id0011_HumanJurkat_All_512_4dTensor_dataset.gif

We can use the `$` symbol to access metadata such as the id and title.

    #Show metadata (e.g. ah_id and title)
    qr$ah_id

    ##  [1] "EH6874" "EH6875" "EH6876" "EH6877" "EH6878" "EH6879" "EH6880" "EH6881"
    ##  [9] "EH6882" "EH6883" "EH6884" "EH6885" "EH6886" "EH6887" "EH6888" "EH6889"
    ## [17] "EH6890" "EH6891" "EH6892" "EH6893" "EH6894" "EH6895" "EH6896" "EH6897"
    ## [25] "EH6898" "EH6899" "EH6900" "EH6901" "EH6902" "EH6903" "EH6904" "EH6905"
    ## [33] "EH6906" "EH6907" "EH6908" "EH6909" "EH6910" "EH6911" "EH6912" "EH6913"
    ## [41] "EH6914" "EH6915" "EH6916" "EH6917" "EH6918" "EH6919" "EH6920" "EH6921"
    ## [49] "EH6922" "EH6923" "EH6924" "EH6925" "EH6926" "EH6927" "EH6928" "EH6929"
    ## [57] "EH6930" "EH6931" "EH6932" "EH6933" "EH6934" "EH6935" "EH6936" "EH6937"
    ## [65] "EH6938" "EH6939" "EH6940" "EH6941" "EH6942" "EH6943" "EH6944" "EH6945"
    ## [73] "EH6946"

    qr$title

    ##  [1] "EM_id0001_Brain_CA1_hippocampus_region_5dTensor.Rds"
    ##  [2] "EM_id0001_Brain_CA1_hippocampus_region_5dTensor_train_dataset.gif"
    ##  [3] "EM_id0002_Drosophila_brain_region_5dTensor.Rds"
    ##  [4] "EM_id0002_Drosophila_brain_region_5dTensor_train_dataset.gif"
    ##  [5] "LM_id0001_DIC_C2DH_HeLa_4dTensor.Rds"
    ##  [6] "LM_id0001_DIC_C2DH_HeLa_4dTensor_train_dataset.gif"
    ##  [7] "LM_id0001_DIC_C2DH_HeLa_4dTensor_Binary.Rds"
    ##  [8] "LM_id0001_DIC_C2DH_HeLa_4dTensor_Binary_train_dataset.gif"
    ##  [9] "LM_id0001_DIC_C2DH_HeLa_5dTensor.Rds"
    ## [10] "LM_id0002_PhC_C2DH_U373_4dTensor.Rds"
    ## [11] "LM_id0002_PhC_C2DH_U373_4dTensor_train_dataset.gif"
    ## [12] "LM_id0002_PhC_C2DH_U373_4dTensor_Binary.Rds"
    ## [13] "LM_id0002_PhC_C2DH_U373_4dTensor_Binary_train_dataset.gif"
    ## [14] "LM_id0002_PhC_C2DH_U373_5dTensor.Rds"
    ## [15] "LM_id0003_Fluo_N2DH_GOWT1_4dTensor.Rds"
    ## [16] "LM_id0003_Fluo_N2DH_GOWT1_4dTensor_train_dataset.gif"
    ## [17] "LM_id0003_Fluo_N2DH_GOWT1_4dTensor_Binary.Rds"
    ## [18] "LM_id0003_Fluo_N2DH_GOWT1_4dTensor_Binary_train_dataset.gif"
    ## [19] "LM_id0003_Fluo_N2DH_GOWT1_5dTensor.Rds"
    ## [20] "EM_id0003_J558L_4dTensor.Rds"
    ## [21] "EM_id0003_J558L_4dTensor_train_dataset.gif"
    ## [22] "EM_id0004_PrHudata_4dTensor.Rds"
    ## [23] "EM_id0004_PrHudata_4dTensor_train_dataset.gif"
    ## [24] "EM_id0005_Mouse_Kidney_2D_All_Mito_512_4dTensor.Rds"
    ## [25] "EM_id0005_Mouse_Kidney_2D_All_Mito_512_4dTensor_dataset.gif"
    ## [26] "EM_id0005_Mouse_Kidney_2D_All_Mito_1024_4dTensor.Rds"
    ## [27] "EM_id0005_Mouse_Kidney_2D_All_Mito_1024_4dTensor_dataset.gif"
    ## [28] "EM_id0005_Mouse_Kidney_2D_All_Nuc_1024_4dTensor.Rds"
    ## [29] "EM_id0005_Mouse_Kidney_2D_All_Nuc_1024_4dTensor_dataset.gif"
    ## [30] "EM_id0005_Mouse_Kidney_2D_WideEM_Mouse_Kidney_Fused_Img_126_190725cut_4dtensor.Rds"
    ## [31] "EM_id0006_Rat_Liver_2D_All_Mito_256_4dTensor.Rds"
    ## [32] "EM_id0006_Rat_Liver_2D_All_Mito_256_4dTensor_dataset.gif"
    ## [33] "EM_id0006_Rat_Liver_2D_All_Mito_512_4dTensor.Rds"
    ## [34] "EM_id0006_Rat_Liver_2D_All_Mito_512_4dTensor_dataset.gif"
    ## [35] "EM_id0006_Rat_Liver_2D_All_Mito_1024_4dTensor.Rds"
    ## [36] "EM_id0006_Rat_Liver_2D_All_Mito_1024_4dTensor_dataset.gif"
    ## [37] "EM_id0006_Rat_Liver_2D_All_Nuc_1024_4dTensor.Rds"
    ## [38] "EM_id0006_Rat_Liver_2D_All_Nuc_1024_4dTensor_dataset.gif"
    ## [39] "EM_id0006_Rat_Liver_2D_WideEM_Rat_Liver_NCMIR_001_160408_1_1185_4dtensor.Rds"
    ## [40] "EM_id0006_Rat_Liver_2D_WideEM_Rat_Liver_NCMIR_001_160408_1186_2370_4dtensor.Rds"
    ## [41] "EM_id0007_Mouse_Kidney_MultiScale_All_High_Gap_1024_4dTensor.Rds"
    ## [42] "EM_id0007_Mouse_Kidney_MultiScale_All_High_Gap_1024_4dTensor_dataset.gif"
    ## [43] "EM_id0007_Mouse_Kidney_MultiScale_All_High_Mito_1024_4dTensor.Rds"
    ## [44] "EM_id0007_Mouse_Kidney_MultiScale_All_High_Mito_1024_4dTensor_dataset.gif"
    ## [45] "EM_id0007_Mouse_Kidney_MultiScale_All_High_Nuc_1024_4dTensor.Rds"
    ## [46] "EM_id0007_Mouse_Kidney_MultiScale_All_High_Nuc_1024_4dTensor_dataset.gif"
    ## [47] "EM_id0007_Mouse_Kidney_MultiScale_All_Middle_Fibroblast_1024_4dTensor.Rds"
    ## [48] "EM_id0007_Mouse_Kidney_MultiScale_All_Middle_Fibroblast_1024_4dTensor_dataset.gif"
    ## [49] "EM_id0007_Mouse_Kidney_MultiScale_All_Middle_Podocyte_1024_4dTensor.Rds"
    ## [50] "EM_id0007_Mouse_Kidney_MultiScale_All_Middle_Podocyte_1024_4dTensor_dataset.gif"
    ## [51] "EM_id0007_Mouse_Kidney_MultiScale_All_Low_Uriniferous_Tubule_1024_4dTensor.Rds"
    ## [52] "EM_id0007_Mouse_Kidney_MultiScale_All_Low_Uriniferous_Tubule_1024_4dTensor_dataset.gif"
    ## [53] "EM_id0007_Mouse_Kidney_MultiScale_All_Low_Glomerulus_1024_4dTensor.Rds"
    ## [54] "EM_id0007_Mouse_Kidney_MultiScale_All_Low_Glomerulus_1024_4dTensor_dataset.gif"
    ## [55] "EM_id0008_Human_NB4_2D_All_Cel_512_4dTensor.Rds"
    ## [56] "EM_id0008_Human_NB4_2D_All_Cel_512_4dTensor_dataset.gif"
    ## [57] "EM_id0008_Human_NB4_2D_All_Mito_512_4dTensor.Rds"
    ## [58] "EM_id0008_Human_NB4_2D_All_Mito_512_4dTensor_dataset.gif"
    ## [59] "EM_id0008_Human_NB4_2D_All_Nuc_crop512_4dTensor.Rds"
    ## [60] "EM_id0008_Human_NB4_2D_All_Nuc_crop512_4dTensor_dataset.gif"
    ## [61] "EM_id0008_Human_NB4_2D_All_Nuc_512_4dTensor.Rds"
    ## [62] "EM_id0008_Human_NB4_2D_All_Nuc_512_4dTensor_dataset.gif"
    ## [63] "EM_id0008_Human_NB4_2D_All_Nuc_1024_4dTensor.Rds"
    ## [64] "EM_id0008_Human_NB4_2D_All_Nuc_1024_4dTensor_dataset.gif"
    ## [65] "EM_id0008_Human_NB4_2D_WideEM_NB4_097_01_4dtensor.Rds"
    ## [66] "EM_id0008_Human_NB4_2D_WideEM_NB4_097_02_4dtensor.Rds"
    ## [67] "EM_id0008_Human_NB4_2D_WideEM_NB4_127_4dtensor.Rds"
    ## [68] "EM_id0009_MurineBMMC_All_512_4dTensor.Rds"
    ## [69] "EM_id0009_MurineBMMC_All_512_4dTensor_dataset.gif"
    ## [70] "EM_id0010_HumanBlast_All_512_4dTensor.Rds"
    ## [71] "EM_id0010_HumanBlast_All_512_4dTensor_dataset.gif"
    ## [72] "EM_id0011_HumanJurkat_All_512_4dTensor.Rds"
    ## [73] "EM_id0011_HumanJurkat_All_512_4dTensor_dataset.gif"

# 4 About datasets

In this section, the query to retrieve each bioimage dataset will be introduced.

## 4.1 EM_id0001: Mouse brain neurons (5D Array / Tensor)

    qr <- query(eh, c("BioImageDbs", "EM_id0001"))

    ##Show metadata
    qr

    ## ExperimentHub with 2 records
    ## # snapshotDate(): 2026-04-23
    ## # $dataprovider: https://www.epfl.ch/labs/cvlab/data/data-em/
    ## # $species: Mus musculus
    ## # $rdataclass: magick-image, List
    ## # additional mcols(): taxonomyid, genome, description,
    ## #   coordinate_1_based, maintainer, rdatadateadded, preparerclass, tags,
    ## #   rdatapath, sourceurl, sourcetype
    ## # retrieve records with, e.g., 'object[["EH6874"]]'
    ##
    ##            title
    ##   EH6874 | EM_id0001_Brain_CA1_hippocampus_region_5dTensor.Rds
    ##   EH6875 | EM_id0001_Brain_CA1_hippocampus_region_5dTensor_train_dataset.gif

    ##Import data
    #Img_Data <- qr[[1]]
    gif_Data <- qr[[2]]

    ## see ?BioImageDbs and browseVignettes('BioImageDbs') for documentation

    ## loading from cache

    #Show animation
    library(magick)

    ## Linking to ImageMagick 6.9.12.98
    ## Enabled features: fontconfig, freetype, fftw, heic, lcms, pango, raw, webp, x11
    ## Disabled features: cairo, ghostscript, rsvg

    ## Using 2 threads

    magick::image_read(gif_Data)

## 4.2 EM_id0002: Drosophila brain neurons (5D Array / Tensor)

    qr <- query(eh, c("BioImageDbs", "EM_id0002"))

    ##Show metadata
    qr

    ## ExperimentHub with 2 records
    ## # snapshotDate(): 2026-04-23
    ## # $dataprovider: the ISBI 2012 Challenge dataset (https://academictorrents.c...
    ## # $species: Drosophila melanogaster
    ## # $rdataclass: magick-image, List
    ## # additional mcols(): taxonomyid, genome, description,
    ## #   coordinate_1_based, maintainer, rdatadateadded, preparerclass, tags,
    ## #   rdatapath, sourceurl, sourcetype
    ## # retrieve records with, e.g., 'object[["EH6876"]]'
    ##
    ##            title
    ##   EH6876 | EM_id0002_Drosophila_brain_region_5dTensor.Rds
    ##   EH6877 | EM_id0002_Drosophila_brain_region_5dTensor_train_dataset.gif

    ##Import data
    #Img_Data <- qr[[1]]
    gif_Data <- qr[[2]]

    ## see ?BioImageDbs and browseVignettes('BioImageDbs') for documentation

    ## loading from cache

    #Show animation
    magick::image_read(gif_Data)

## 4.3 EM_id0003: J558L cells (4D Array / Tensor)

    qr <- query(eh, c("BioImageDbs", "EM_id0003"))

    ##Show metadata
    qr

    ## ExperimentHub with 2 records
    ## # snapshotDate(): 2026-04-23
    ## # $dataprovider: Pattern Recognition and Image Processing, University of Fre...
    ## # $species: Mus musculus
    ## # $rdataclass: magick-image, List
    ## # additional mcols(): taxonomyid, genome, description,
    ## #   coordinate_1_based, maintainer, rdatadateadded, preparerclass, tags,
    ## #   rdatapath, sourceurl, sourcetype
    ## # retrieve records with, e.g., 'object[["EH6893"]]'
    ##
    ##            title
    ##   EH6893 | EM_id0003_J558L_4dTensor.Rds
    ##   EH6894 | EM_id0003_J558L_4dTensor_train_dataset.gif

    ##Import data
    #Img_Data <- qr[[1]]

    #Show animation
    gif_Data <- qr[[2]]

    ## see ?BioImageDbs and browseVignettes('BioImageDbs') for documentation

    ## loading from cache

    magick::image_read(gif_Data)

## 4.4 EM_id0004: primary human T cells (4D Array / Tensor)

    qr <- query(eh, c("BioImageDbs", "EM_id0004"))

    ##Show metadata
    qr

    ## ExperimentHub with 2 records
    ## # snapshotDate(): 2026-04-23
    ## # $dataprovider: Pattern Recognition and Image Processing, University of Fre...
    ## # $species: Homo sapiens
    ## # $rdataclass: magick-image, List
    ## # additional mcols(): taxonomyid, genome, description,
    ## #   coordinate_1_based, maintainer, rdatadateadded, preparerclass, tags,
    ## #   rdatapath, sourceurl, sourcetype
    ## # retrieve records with, e.g., 'object[["EH6895"]]'
    ##
    ##            title
    ##   EH6895 | EM_id0004_PrHudata_4dTensor.Rds
    ##   EH6896 | EM_id0004_PrHudata_4dTensor_train_dataset.gif

    ##Import data
    #Img_Data <- qr[[1]]

    #Show animation
    gif_Data <- qr[[2]]

    ## see ?BioImageDbs and browseVignettes('BioImageDbs') for documentation

    ## loading from cache

    magick::image_read(gif_Data)

## 4.5 EM_id0005: Mouse Kidney 2D imaging (4D Array / Tensor)

    qr <- query(eh, c("BioImageDbs", "EM_id0005"))

    ##Show metadata
    qr

    ## ExperimentHub with 7 records
    ## # snapshotDate(): 2026-04-23
    ## # $dataprovider: Satoshi Kume <satoshi.kume.1984@gmail.com>
    ## # $species: Mus musculus
    ## # $rdataclass: List, magick-image
    ## # additional mcols(): taxonomyid, genome, description,
    ## #   coordinate_1_based, maintainer, rdatadateadded, preparerclass, tags,
    ## #   rdatapath, sourceurl, sourcetype
    ## # retrieve records with, e.g., 'object[["EH6897"]]'
    ##
    ##            title
    ##   EH6897 | EM_id0005_Mouse_Kidney_2D_All_Mito_512_4dTensor.Rds
    ##   EH6898 | EM_id0005_Mouse_Kidney_2D_All_Mito_512_4dTensor_dataset.gif
    ##   EH6899 | EM_id0005_Mouse_Kidney_2D_All_Mito_1024_4dTensor.Rds
    ##   EH6900 | EM_id0005_Mouse_Kidney_2D_All_Mito_1024_4dTensor_dataset.gif
    ##   EH6901 | EM_id0005_Mouse_Kidney_2D_All_Nuc_1024_4dTensor.Rds
    ##   EH6902 | EM_id0005_Mouse_Kidney_2D_All_Nuc_1024_4dTensor_dataset.gif
    ##   EH6903 | EM_id0005_Mouse_Kidney_2D_WideEM_Mouse_Kidney_Fused_Img_126_1907...

    ##Import data
    #Img_Data <- qr[[1]]

    #Show animation
    gif_Data <- qr[[2]]

    ## see ?BioImageDbs and browseVignettes('BioImageDbs') for documentation

    ## loading from cache

    magick::image_read(gif_Data)

## 4.6 EM_id0006: Rat Liver 2D imaging (4D Array / Tensor)

    qr <- query(eh, c("BioImageDbs", "EM_id0006"))

    ##Show metadata
    qr

    ## ExperimentHub with 10 records
    ## # snapshotDate(): 2026-04-23
    ## # $dataprovider: Satoshi Kume <satoshi.kume.1984@gmail.com>
    ## # $species: Rattus norvegicus
    ## # $rdataclass: List, magick-image
    ## # additional mcols(): taxonomyid, genome, description,
    ## #   coordinate_1_based, maintainer, rdatadateadded, preparerclass, tags,
    ## #   rdatapath, sourceurl, sourcetype
    ## # retrieve records with, e.g., 'object[["EH6904"]]'
    ##
    ##            title
    ##   EH6904 | EM_id0006_Rat_Liver_2D_All_Mito_256_4dTensor.Rds
    ##   EH6905 | EM_id0006_Rat_Liver_2D_All_Mito_256_4dTensor_dataset.gif
    ##   EH6906 | EM_id0006_Rat_Liver_2D_All_Mito_512_4dTensor.Rds
    ##   EH6907 | EM_id0006_Rat_Liver_2D_All_Mito_512_4dTensor_dataset.gif
    ##   EH6908 | EM_id0006_Rat_Liver_2D_All_Mito_1024_4dTensor.Rds
    ##   EH6909 | EM_id0006_Rat_Liver_2D_All_Mito_1024_4dTensor_dataset.gif
    ##   EH6910 | EM_id0006_Rat_Liver_2D_All_Nuc_1024_4dTensor.Rds
    ##   EH6911 | EM_id0006_Rat_Liver_2D_All_Nuc_1024_4dTensor_dataset.gif
    ##   EH6912 | EM_id0006_Rat_Liver_2D_WideEM_Rat_Liver_NCMIR_001_160408_1_1185_...
    ##   EH6913 | EM_id0006_Rat_Liver_2D_WideEM_Rat_Liver_NCMIR_001_160408_1186_23...

    ##Import data
    #Img_Data <- qr[[1]]

    #Show animation
    gif_Data <- qr[[2]]

    ## see ?BioImageDbs and browseVignettes('BioImageDbs') for documentation

    ## loading from cache

    magick::image_read(gif_Data)

## 4.7 EM_id0007: Mouse Kidney MultiScale images (4D Array / Tensor)

    qr <- query(eh, c("BioImageDbs", "EM_id0007"))

    ##Show metadata
    qr

    ## ExperimentHub with 14 records
    ## # snapshotDate(): 2026-04-23
    ## # $dataprovider: Satoshi Kume <satoshi.kume.1984@gmail.com>
    ## # $species: Mus musculus
    ## # $rdataclass: magick-image, List
    ## # additional mcols(): taxonomyid, genome, description,
    ## #   coordinate_1_based, maintainer, rdatadateadded, preparerclass, tags,
    ## #   rdatapath, sourceurl, sourcetype
    ## # retrieve records with, e.g., 'object[["EH6914"]]'
    ##
    ##            title
    ##   EH6914 | EM_id0007_Mouse_Kidney_MultiScale_All_High_Gap_1024_4dTensor.Rds
    ##   EH6915 | EM_id0007_Mouse_Kidney_MultiScale_All_High_Gap_1024_4dTensor_dat...
    ##   EH6916 | EM_id0007_Mouse_Kidney_MultiScale_All_High_Mito_1024_4dTensor.Rds
    ##   EH6917 | EM_id0007_Mouse_Kidney_MultiScale_All_High_Mito_1024_4dTensor_da...
    ##   EH6918 | EM_id0007_Mouse_Kidney_MultiScale_All_High_Nuc_1024_4dTensor.Rds
    ##   ...      ...
    ##   EH6923 | EM_id0007_Mouse_Kidney_MultiScale_All_Middle_Podocyte_1024_4dTen...
    ##   EH6924 | EM_id0007_Mouse_Kidney_MultiScale_All_Low_Uriniferous_Tubule_102...
    ##   EH6925 | EM_id0007_Mouse_Kidney_MultiScale_All_Low_Uriniferous_Tubule_102...
    ##   EH6926 | EM_id0007_Mouse_Kidney_MultiScale_All_Low_Glomerulus_1024_4dTens...
    ##   EH6927 | EM_id0007_Mouse_Kidney_MultiScale_All_Low_Glomerulus_1024_4dTens...

    ##Import data
    #Img_Data <- qr[[1]]

    #Show animation
    gif_Data <- qr[[2]]

    ## see ?BioImageDbs and browseVignettes('BioImageDbs') for documentation

    ## loading from cache

    magick::image_read(gif_Data)

## 4.8 EM_id0008: Human NB4 cells (4D Array / Tensor)

    qr <- query(eh, c("BioImageDbs", "EM_id0008"))

    ##Show metadata
    qr

    ## ExperimentHub with 13 records
    ## # snapshotDate(): 2026-04-23
    ## # $dataprovider: Satoshi Kume <satoshi.kume.1984@gmail.com>
    ## # $species: Homo sapiens
    ## # $rdataclass: List, magick-image
    ## # additional mcols(): taxonomyid, genome, description,
    ## #   coordinate_1_based, maintainer, rdatadateadded, preparerclass, tags,
    ## #   rdatapath, sourceurl, sourcetype
    ## # retrieve records with, e.g., 'object[["EH6928"]]'
    ##
    ##            title
    ##   EH6928 | EM_id0008_Human_NB4_2D_All_Cel_512_4dTensor.Rds
    ##   EH6929 | EM_id0008_Human_NB4_2D_All_Cel_512_4dTensor_dataset.gif
    ##   EH6930 | EM_id0008_Human_NB4_2D_All_Mito_512_4dTensor.Rds
    ##   EH6931 | EM_id0008_Human_NB4_2D_All_Mito_512_4dTensor_dataset.gif
    ##   EH6932 | EM_id0008_Human_NB4_2D_All_Nuc_crop512_4dTensor.Rds
    ##   ...      ...
    ##   EH6936 | EM_id0008_Human_NB4_2D_All_Nuc_1024_4dTensor.Rds
    ##   EH6937 | EM_id0008_Human_NB4_2D_All_Nuc_1024_4dTensor_dataset.gif
    ##   EH6938 | EM_id0008_Human_NB4_2D_WideEM_NB4_097_01_4dtensor.Rds
    ##   EH6939 | EM_id0008_Human_NB4_2D_WideEM_NB4_097_02_4dtensor.Rds
    ##   EH6940 | EM_id0008_Human_NB4_2D_WideEM_NB4_127_4dtensor.Rds

    ##Import data
    #Img_Data <- qr[[1]]

    #Show animation
    gif_Data <- qr[[2]]

    ## see ?BioImageDbs and browseVignettes('BioImageDbs') for documentation

    ## loading from cache

    magick::image_read(gif_Data)

## 4.9 EM_id0009: Murine BMMC cells (4D Array / Tensor)

    qr <- query(eh, c("BioImageDbs", "EM_id0009"))

    ##Show metadata
    qr

    ## ExperimentHub with 2 records
    ## # snapshotDate(): 2026-04-23
    ## # $dataprovider: Pattern Recognition and Image Processing, University of Fre...
    ## # $species: Mus musculus
    ## # $rdataclass: magick-image, List
    ## # additional mcols(): taxonomyid, genome, description,
    ## #   coordinate_1_based, maintainer, rdatadateadded, preparerclass, tags,
    ## #   rdatapath, sourceurl, sourcetype
    ## # retrieve records with, e.g., 'object[["EH6941"]]'
    ##
    ##            title
    ##   EH6941 | EM_id0009_MurineBMMC_All_512_4dTensor.Rds
    ##   EH6942 | EM_id0009_MurineBMMC_All_512_4dTensor_dataset.gif

    ##Import data
    #Img_Data <- qr[[1]]

    #Show animation
    gif_Data <- qr[[2]]

    ## see ?BioImageDbs and browseVignettes('BioImageDbs') for documentation

    ## loading from cache

    magick::image_read(gif_Data)

## 4.10 EM_id0010: Human Blast cells (4D Array / Tensor)

    qr <- query(eh, c("BioImageDbs", "EM_id0010"))

    ##Show metadata
    qr

    ## ExperimentHub with 2 records
    ## # snapshotDate(): 2026-04-23
    ## # $dataprovider: Pattern Recognition and Image Processing, University of Fre...
    ## # $species: Homo sapiens
    ## # $rdataclass: magick-image, List
    ## # additional mcols(): taxonomyid, genome, description,
    ## #   coordinate_1_based, maintainer, rdatadateadded, preparerclass, tags,
    ## #   rdatapath, sourceurl, sourcetype
    ## # retrieve records with, e.g., 'object[["EH6943"]]'
    ##
    ##            title
    ##   EH6943 | EM_id0010_HumanBlast_All_512_4dTensor.Rds
    ##   EH6944 | EM_id0010_HumanBlast_All_512_4dTensor_dataset.gif

    ##Import data
    #Img_Data <- qr[[1]]

    #Show animation
    gif_Data <- qr[[2]]

    ## see ?BioImageDbs and browseVignettes('BioImageDbs') for documentation

    ## loading from cache

    magick::image_read(gif_Data)
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