DoReMiTra
This is the development version of DoReMiTra; for the stable release version, see DoReMiTra.
Orchestrating Blood Radiation Transcriptomic Data
Bioconductor version: Development (3.24)
DoReMiTra is an R data package providing access to curated transcriptomic datasets related to blood radiation, with a focus on neutron, x-ray, and gamma ray studies. It is designed to facilitate radiation biology research and support data exploration and reproducibility in radiation transcriptomics. All datasets are provided as SummarizedExperiment objects, allowing seamless integration with the Bioconductor ecosystem.
Author: Ahmed Salah [aut, cre]
, Federico Marini [aut]
Maintainer: Ahmed Salah <ahhassan at uni-mainz.de>
citation("DoReMiTra")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("DoReMiTra")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DoReMiTra")| The DoReMiTra User's Guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | ExperimentData, ExperimentHub, ExpressionData, GEO, PackageTypeData, RNASeqData |
| Version | 1.3.0 |
| License | MIT + file LICENSE |
| Depends | R (>= 4.5.0) |
| Imports | ExperimentHub, SummarizedExperiment, AnnotationHub, utils, glue, S4Vectors, scater |
| System Requirements | |
| URL | https://github.com/AhmedSAHassan/DoReMiTra |
| Bug Reports | https://github.com/AhmedSAHassan/DoReMiTra/issues |
See More
| Suggests | testthat (>= 3.0.0), knitr, rmarkdown, BiocStyle, DT |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | DoReMiTra_1.3.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/DoReMiTra |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DoReMiTra |
| Package Short Url | https://bioconductor.org/packages/DoReMiTra/ |
| Package Downloads Report | Download Stats |