IlluminaHumanMethylation450kmanifest
This is the development version of IlluminaHumanMethylation450kmanifest; for the stable release version, see IlluminaHumanMethylation450kmanifest.
Annotation for Illumina's 450k methylation arrays
Bioconductor version: Development (3.24)
Manifest for Illumina's 450k array data
Author: Kasper Daniel Hansen, Martin Aryee
Maintainer: Kasper Daniel Hansen <khansen at jhsph.edu>
citation("IlluminaHumanMethylation450kmanifest")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("IlluminaHumanMethylation450kmanifest")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | AnnotationData, DNAMethylation, Homo_sapiens, IlluminaChip |
| Version | 0.4.0 |
| License | Artistic-2.0 |
| Depends | R (>= 2.13.0), minfi |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | conumee, skewr, minfiData, methylationArrayAnalysis |
| Imports Me | epimutacions, funtooNorm, methylCC, missMethyl |
| Suggests Me | dnaEPICO, minfi, RnBeads, shinyepico, FlowSorted.Blood.EPIC, FlowSorted.CordBloodCombined.450k, HiBED, MLML2R |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | IlluminaHumanMethylation450kmanifest_0.4.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Package Short Url | https://bioconductor.org/packages/IlluminaHumanMethylation450kmanifest/ |
| Package Downloads Report | Download Stats |