BSgenome.CneoformansVarGrubiiKN99.NCBI.ASM221672v1
This is the development version of BSgenome.CneoformansVarGrubiiKN99.NCBI.ASM221672v1; for the stable release version, see BSgenome.CneoformansVarGrubiiKN99.NCBI.ASM221672v1.
Full Genome Sequence for Cryptococcus neoformans var. grubii KN99 (ASM221672v1)
Bioconductor version: Development (3.24)
Full genome sequences for Cryptococcus neoformans var. grubii KN99 (assembly ASM221672v1 assembly accession GCA_002216725.1).
Author: The Bioconductor Dev Team
Maintainer: Chase Mateusiak <chasem at wustl.edu>
citation("BSgenome.CneoformansVarGrubiiKN99.NCBI.ASM221672v1")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("BSgenome.CneoformansVarGrubiiKN99.NCBI.ASM221672v1")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | AnnotationData, BSgenome, Cryptococcus_neoformans_var_grubii_KN99, Genetics |
| Version | 1.0.0 |
| License | Artistic-2.0 |
| Depends | R (>= 3.5.0), BSgenome(>= 1.62.0) |
| Imports | BSgenome |
| System Requirements | |
| URL |
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Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BSgenome.CneoformansVarGrubiiKN99.NCBI.ASM221672v1_1.0.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Package Short Url | https://bioconductor.org/packages/BSgenome.CneoformansVarGrubiiKN99.NCBI.ASM221672v1/ |
| Package Downloads Report | Download Stats |