# Generated by roxygen2: do not edit by hand

S3method(print,reduced.pca)
S3method(print,reduced.plsda)
S3method(print,reduced.tsne)
S3method(summary,reduced.pca)
S3method(summary,reduced.plsda)
S3method(summary,reduced.tsne)
export(clusterFeatures)
export(compareSamples)
export(imputeIntensity)
export(imputeKNN)
export(normalizeIntensity)
export(normalizePQN)
export(plotBox)
export(plotCorr)
export(plotMiss)
export(plotRTgroup)
export(plotReduced)
export(reduceFeatures)
export(reducePCA)
export(reducePLSDA)
export(reduceTSNE)
export(removeBlankRatio)
export(removeFeatures)
export(removeICC)
export(removeMiss)
export(removeRSD)
export(scaleCols)
export(scaleRows)
importClassesFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_violin)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_shape_manual)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,sec_axis)
importFrom(ggplot2,stat_ellipse)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(grDevices,dev.flush)
importFrom(grDevices,dev.hold)
importFrom(graphics,Axis)
importFrom(graphics,box)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,points)
importFrom(graphics,rect)
importFrom(graphics,strwidth)
importFrom(graphics,text)
importFrom(limma,contrasts.fit)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,makeContrasts)
importFrom(limma,normalizeCyclicLoess)
importFrom(limma,topTable)
importFrom(methods,is)
importFrom(patchwork,plot_layout)
importFrom(stats,as.formula)
importFrom(stats,cor)
importFrom(stats,cutree)
importFrom(stats,dist)
importFrom(stats,fitted)
importFrom(stats,hclust)
importFrom(stats,mad)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,na.omit)
importFrom(stats,prcomp)
importFrom(stats,predict)
importFrom(stats,reshape)
importFrom(stats,residuals)
importFrom(stats,sd)
importMethodsFrom(SummarizedExperiment,"assay<-")
importMethodsFrom(SummarizedExperiment,"colData<-")
importMethodsFrom(SummarizedExperiment,"rowData<-")
importMethodsFrom(SummarizedExperiment,assay)
importMethodsFrom(SummarizedExperiment,colData)
importMethodsFrom(SummarizedExperiment,rowData)
