# Generated by roxygen2: do not edit by hand

S3method(subset,codonTable)
export(B)
export(Bplot)
export(CAI)
export(E)
export(ENC)
export(ENCprime)
export(Fop)
export(GCB)
export(MCB)
export(MELP)
export(MILC)
export(SCUO)
export(codonCounts)
export(codonTable)
export(contable)
export(crossTab)
export(enrichBarplot)
export(enrichMAplot)
export(enrichMatrix)
export(enrichment)
export(getCOG)
export(getID)
export(getKO)
export(getSeqAnnot)
export(getVariable)
export(getlen)
export(intraBplot)
export(readSet)
export(reduceCrossTab)
export(setCOG)
export(setKO)
exportMethods("[")
exportMethods("[[")
exportMethods(length)
exportMethods(show)
import(data.table)
import(ggplot2)
importClassesFrom(Biobase,AnnotatedDataFrame)
importFrom(Biobase,AnnotatedDataFrame)
importFrom(Biobase,pData)
importFrom(Biostrings,DNAStringSet)
importFrom(Biostrings,getGeneticCode)
importFrom(Biostrings,oligonucleotideFrequency)
importFrom(Biostrings,readDNAStringSet)
importFrom(Biostrings,width)
importFrom(dplyr,progress_estimated)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,setClass)
importFrom(methods,setGeneric)
importFrom(methods,setMethod)
importFrom(methods,setValidity)
importFrom(methods,show)
importFrom(methods,validObject)
importFrom(purrr,map)
importFrom(stats,binom.test)
importFrom(stats,p.adjust)
importFrom(stats,quantile)
importFrom(stats,reorder)
importFrom(stringr,str_extract)
importFrom(utils,capture.output)
importFrom(utils,globalVariables)
importFrom(utils,head)
importFrom(utils,sessionInfo)
importFrom(utils,str)
importFrom(utils,tail)
importFrom(utils,unzip)
