f4402d91a32193ead1b0c420a2b2886e *DESCRIPTION
7628e7e2306209895b215e317e38d881 *LICENSE
25b04567e64837cba87de3e898ffed74 *NAMESPACE
05a6ce4b74e72256b2d574e513780129 *NEWS.md
94b91d01485cde4e2bed797069767f0b *R/Aclasses.R
23e7417a2ba8ffde24ee32c0264b8339 *R/Aexample.R
bc007dfa6fd3dfd5b31b174c0ba88ecf *R/AnnotationFunctions.R
24850d7c51c8f9db78cc3a797bd31ecd *R/AnnotationMethods.R
82587c77d7a54a8540ed77a10b4e8414 *R/ClusteringFunctions.R
6ddb44ed250105d51baf65564c4846ac *R/ClusteringMethods.R
b8298c85341a68feb6162baed5bfefea *R/ConsensusFunctions.R
a1292b30cbde426941de0b51ff13307d *R/ConsensusMethods.R
6aa14c512379db136f571350eda52b83 *R/DataAccessors.R
4260a477cb54022258258151b0048a74 *R/EnhancerMethods.R
4e33ebab4cc9e9ab794d1e63ada11900 *R/ExportFunctions.R
edf8ca4656f508618594fe2d45f94113 *R/ExportMethods.R
3e4bd6b92a2fa509d8b12df08c53d420 *R/ExpressionFunctions.R
6ec08c477f1b08581401f1e82a6d16ee *R/ExpressionMethods.R
6ac6985c13be4e768d0b525d4a386472 *R/FilteringFunctions.R
dcb09f681f4c126e5f7df17f5b5fb2d0 *R/FilteringMethods.R
e6f3b977be4e54636068974af40e10f8 *R/ImportFunctions.R
d04b343ef20a9b8aa3c3a4e03e4d9df8 *R/ImportMethods.R
151f95c692cd7d88d4a30c66a7716cad *R/MergingMethods.R
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66981a926c37c0c205663c8f791dca31 *R/ShapeMethods.R
658cb8b4f8d716a10ea591882d0d7045 *R/ShiftingFunctions.R
82287567c9b4ea1179c85a7e551ffafb *R/ShiftingMethods.R
92e47ac31625f6086b7452b113b5e5de *R/ShowMethods.R
2a4756b1c66049d843ffffaaf2b5d1a2 *R/TSSr.R
42d3b290378e3cf9301d5db7e49e252f *README.md
b4ea562d678e7c1be7afa12e6882dd63 *build/vignette.rds
5b28af1a0c38cfb861a04f5cd704a566 *data/exampleTSSr.rda
146fb63e5598de61019f2124da714e5f *inst/CITATION
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31696f11bcbb3406d4fb34e62875a208 *inst/extdata/example-cigar.bam
7ad86e4f2ce1310519933f9d7f4a0eb3 *inst/extdata/example-paired.bam
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5d5fe9941382a0ed6b06230771ae541b *man/exportTSStable.Rd
804437868f205158a55fa9536ad8812f *man/exportTSStoBedgraph.Rd
f43da1b273e2a433276d7dcb9a320202 *man/filterTSS.Rd
1fd599f45f4ffdf9ee66d46fd103e5d3 *man/getTSS.Rd
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1f7dda6919415c7955d961d69bace97b *man/plotCorrelation.Rd
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1be2a1ed254061291ae41e67af4f3c66 *man/shiftPromoter.Rd
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6f4af86a3e30c5c914d16b9c3d6c7b84 *tests/testthat.R
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bd691786f856fcceccafee466c4142c3 *vignettes/figures/02_PCA_plot_v2.png
bd691786f856fcceccafee466c4142c3 *vignettes/figures/02_PCA_plot_v3.png
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5eb9779663991ea8ff9b66ac8b0cdf7a *vignettes/vignette.Rmd
