ebaf74f6b4462e1731e4c657d6b25725 *DESCRIPTION
e758b274a81e42882a118244fa136bca *LICENSE
d46a6730b2320f7a844dd7b5db4d3584 *LICENSE.md
9d07a77cfbabdf6d56a03b5b75703167 *NAMESPACE
6b73d71495b7475368e47676c7e1a142 *NEWS.md
fd5843dd1c1d94e61e0b32f95d44db91 *R/AUCProcessor.R
96dc1aa28f691a3c9069826a19848e54 *R/SimiCviz-package.R
642123cb2eef3338772ae1270df95ce6 *R/SimiCvizExperiment-utils.R
c600c8cfb2968f3cb4b5617a9c2bb00b *R/dissimilarity.R
2f27fb50856301377aa2585316880254 *R/io.R
107c63fea72d552768dd3ef8df5351c3 *R/plot_auc.R
62fee07199d4d5d1edc924025b62a6ee *R/plot_bar.R
a7f641023de3ea8daf3ea7593e6b0cc1 *R/plot_dissimilarity.R
692ce832396c9638a81383ac95ba96f2 *R/plot_io.R
da3272cdfb45878a2d306ade4a8c91df *R/plot_network_heatmap.R
ca975a856973d152871ba38f4cddbfd3 *R/plot_r2_distribution.R
e51f690d5073350625ecca4114e4011f *R/zzz.R
6d5aa1ea54bec29535612189cf3b7fee *README.md
821ee2a68cc657deeee67c31ce81cb25 *build/vignette.rds
9e54d5a8c4338cd18a5135de2fd47fee *inst/doc/SimiCviz.R
ebef370142e77f4481717edf6a446cf1 *inst/doc/SimiCviz.Rmd
ceb84489ab6f14b94a4c5ded09f0fbcc *inst/doc/SimiCviz.html
7bad723831176721d99bb492b36ae4f8 *inst/extdata/example_auc.csv
c955909a69221cf4c4372811432a0128 *inst/extdata/example_weights.csv
0e3db3b7df356d8ce1198a13d6e997c0 *inst/extdata/inputFiles/disease_stage_annotation.csv
bd883d8c39b8cdea1860da501ef34e61 *inst/extdata/inputFiles/example_expression.pickle
4004e697be172ca58609f23c0502b38f *inst/extdata/metadata.csv
02f4276bd7170c7b189eb9554105b5d6 *inst/extdata/outputSimic/example_simic_auc_collected.csv
d7f83797210777b869605df835adf9f1 *inst/extdata/outputSimic/example_simic_weights.pickle
db94e35df5a4b485ab64158b047e8b24 *inst/extdata/simic_full.rds
438dd0b3e3eda548f7995191037b71c1 *inst/scripts/generate_simicfull.R
88aa5f332bdaaf7f808e56f985bc88be *man/AUCProcessor-class.Rd
08ad43800a5e17d157b8dd5b2efd1883 *man/AUCProcessor.Rd
5ae84142770072ec69a3d05cfa5ed67b *man/SimiCviz.Rd
9ada70ab8f8b5843c2202aa687716393 *man/SimiCvizExperiment-class.Rd
2b4c54525f342af39c5452adbc0eb1b5 *man/SimiCvizExperiment.Rd
2c92a78df15a698fa577dc1a88c422bb *man/auc_list_to_df.Rd
a577d6edc2168a7aa3ce89e6f4a07b54 *man/calculate_activity_scores.Rd
538aff8bb839e3fdd6695edf1d6b73e7 *man/calculate_dissimilarity.Rd
38a86b9f3d3c9808740427c77eafcbdf *man/calculate_ecdf_auc.Rd
7cc1a45316cc53a461bf651cffbfbe33 *man/compute_auc-AUCProcessor-method.Rd
4fdb46726307ee49f43eea513e5a3669 *man/compute_auc.Rd
ae81aa404127c88ff6b26ca48b8dec43 *man/dot-compute_cell_auc.Rd
3862b441758d47b700a21a4df07cf3fd *man/dot-ensure_genes_x_cells_format.Rd
573cf440c18215813892856e92123e53 *man/dot-make_weight_barplot.Rd
9dd303f003908cb28fbb511425979d62 *man/dot-plot_weights_paginated.Rd
03bb56656554790d5ae703b7dc7cceaf *man/dot-subset_auc_for_label.Rd
be827d039f526d82519e1aa095785391 *man/dot-weights_to_long.Rd
ed448e78297660fdef7bd7021ae27f1f *man/export_SimiCviz_csv.Rd
29699178d9775d4242067f8a085b24e1 *man/get_auc-AUCProcessor-method.Rd
f8ea8e24adda03e80282900ca72fd1c4 *man/get_auc.Rd
60bd7b6077b27da946fed72ab106a71d *man/get_tf_network.Rd
2adcd05542264824668846f78e4836f9 *man/is.SimiCvizExperiment.Rd
0c8a5abaf9b2632b6476a93afbea5696 *man/load_SimiCPipeline.Rd
0324d1a432b9a9c40b770c6c329db29f *man/load_cell_labels.Rd
ee258031b424efb3a6e2e5130bed2be3 *man/load_collected_auc.Rd
440c1907b3c1448613012578e47f9edd *man/load_expression_matrix.Rd
e8810d32b7940bc0f7bb0582418b84d8 *man/load_from_csv.Rd
68dc684c591e6c14d94dafe998c23a51 *man/plot_auc_cumulative.Rd
471ee82507e069fae86a416076873943 *man/plot_auc_distributions.Rd
13a742c7b4cd4fd012979e338140af7f *man/plot_auc_heatmap.Rd
3c7a2c8c5ea9bf2dc2d82ed8e70927bd *man/plot_auc_summary_statistics.Rd
bdb03e5a71f3322f469d9197ac9f6bcf *man/plot_dissimilarity_heatmap.Rd
02e5abe69f2f1bcbf1ca693423489dee *man/plot_r2_distribution.Rd
325593a83cf6769c89c1cb477703a079 *man/plot_target_weights.Rd
338cd5e6b3d13d717163c9ef305f1bc6 *man/plot_tf_network_heatmap.Rd
f2b540e3adcaabfd7246fe64cd79a416 *man/plot_tf_weights.Rd
c78fcae7ca3f6091a836b2fe424cade2 *man/read_auc_csv.Rd
3e5834630327412ef3bfe09f279d383b *man/read_auc_pickle.Rd
8faee69b40a44ca13f19c0a9c0996c07 *man/read_pickle.Rd
1fc0b18c8352af940357998cffae6747 *man/read_weights_csv.Rd
55cb0c73f88429069968c1269b1401ea *man/read_weights_pickle.Rd
188f55ff17ecd289bb0d75690ab05aad *man/setCellLabels.Rd
c40a1810293817f3349dcb0785f6d3b0 *man/setLabelNames.Rd
b7647b47f7028bbdd9626214486d859c *tests/testthat.R
cf0d6404480229d47ad36e708e910185 *tests/testthat/test-basic.R
18e3e6b5ec6ce2124ddc80f65b42dfa2 *tests/testthat/test-integration.R
b6ce06492775d5f8d21d6c149323076e *tests/testthat/test-regressions.R
ebef370142e77f4481717edf6a446cf1 *vignettes/SimiCviz.Rmd
92b64ed9180a42e645a8fc70fc568307 *vignettes/simicviz_graphical_abstract.png
