6b0a0c4fef6ded0b966b1d344d6839f1 *DESCRIPTION
83ee46ce66a62d8d14fadf2cce1e4a35 *NAMESPACE
e5f5d2c076550ecef406b9a3acb617d3 *R/AllClasses.R
9941b690d273d3ffaafe76d371908769 *R/AllGenerics.R
5bc2c731687785a5868a51d7c03e3736 *R/AllUtilities.R
0dea04c53b53c65f44d70a6e0a5f897b *R/Methods-Iterator.R
4d2b8ed6444a82974d09a208970d6764 *R/Methods-SeqVarData.R
283b32941261578a56f9549958dd2587 *R/Methods-SeqVarGDSClass.R
ea6f07b9ffd9b54cb29cbfd643ae1c3c *R/alternateAlleleDetection.R
6c0b259cea225b0ea99d27c49377eec2 *R/chromWithPAR.R
201944eca5e89028a8d74293c18e5377 *R/duplicateDiscordance.R
3d237e7f17f40c8da8c978aa61b1660d *R/hwe.R
976095c393d9c3584f8cc712b86043f5 *R/inbreedCoeff.R
3fe40b9df9b2b69dee637f27fa12ea4d *R/mendelErr.R
f72976919b83e653ae91843c3e6c4518 *R/pca.R
dca5302b0fc5debb5d8209298eb7ffe5 *R/refFrac.R
2b14524ad6cde3784eb074df5c05a659 *R/regression.R
829612e20fc9dfecc93f94bb6c36a8b5 *R/setVariantID.R
65d74448ceeb07974d031cb37937cc19 *README.md
72a9402191dc4b65c8606a92ea5cf74d *build/vignette.rds
5d89e3b4edcf05a45b2c40a53607f9c2 *data/pedigree.RData
1b8265af1b792c25aa3b781714719a03 *inst/NEWS.Rd
168d1679be031c086a65ee2386af8055 *inst/doc/Iterators.R
9c7a7781ede0df17497e43f0c9ce1c9a *inst/doc/Iterators.Rmd
c8fc844126f157265b6f0825fc184ed0 *inst/doc/Iterators.html
716b5c3919a300ebbd8272f086ff75ba *inst/doc/SeqVarTools.R
b13468daf122ed7e747cef251a9df3d5 *inst/doc/SeqVarTools.Rmd
0017686010b4ce967531a6d7739ced61 *inst/doc/SeqVarTools.html
ae093c8db2c33620ef663e88e448e8ac *inst/extdata/1KG_chrY.gds
fe53727d42944d3061179240a51f18a2 *inst/extdata/gl_chr1.gds
277341ce20f406ab09a0c23c6bd0d86f *inst/extdata/gl_chr1.vcf
0d876e7742442bff7ccc96fcebfbff27 *inst/extdata/hapmap_annotation.txt
300d237092c8d847ebc6b107f28130fb *inst/extdata/hapmap_annotation_DD.txt
9fd0c95a515e42d24d9623371a5789a9 *inst/extdata/hapmap_exome_chr22.gds
4beba1d549b072b2b347ba95e2e09470 *inst/unitTests/test_Iterator.R
4c925a5dde577bef97a0924e3263ed89 *inst/unitTests/test_SeqVarData.R
6ee3bec8eadcf9900d7cdfbc461ec7a7 *inst/unitTests/test_VariableLength.R
7697dc00c2ffbeddebf19a269eac6e39 *inst/unitTests/test_alleleFrequency.R
122a142ddb16eedaf9cbe76775563b59 *inst/unitTests/test_alleles.R
2428338d68b3b354eb13407aa5dac611 *inst/unitTests/test_alternateAlleleDetection.R
9592ee40b115046a6df186ada350ee39 *inst/unitTests/test_applyMethod.R
cd0460b81da068ec816ba397b1846ac3 *inst/unitTests/test_countSingletons.R
09f97c76845f9ad59de688b899c5f2f0 *inst/unitTests/test_dosage.R
f9100bbdb5c98c51a16e7ff139c901df *inst/unitTests/test_duplicateDiscordance.R
03b19e9a9bba728988239de9536d9b4f *inst/unitTests/test_getData.R
367fcd063f12bb69ce1b246624f2b296 *inst/unitTests/test_hethom.R
da760327a06e7759615705513b4ae3ba *inst/unitTests/test_hwe.R
f317f78bdf641ff68a5c8e82610fe78c *inst/unitTests/test_inbreedCoeff.R
a8530c8672740cbca0793864df23b7e3 *inst/unitTests/test_meanBySample.R
fb26a54e7a51d20af5fd60dcfce20c88 *inst/unitTests/test_mendelErr.R
18b7fbcf1b0abbf3c389427c38bb4fab *inst/unitTests/test_missingGenotypeRate.R
50a6edc514ac9c1362e12176adedbb22 *inst/unitTests/test_parallel.R
6fbda97911537143c5d87425b92e8e5d *inst/unitTests/test_pca.R
5f71f17f30ce922e7f272d473aecc609 *inst/unitTests/test_refFrac.R
e590df157169b1a2aa18e511a99cd6bb *inst/unitTests/test_regression.R
cfc96835525fc9946ab8a8421ea10409 *inst/unitTests/test_setVariantID.R
48e3df184947d57153b3486a001c155f *inst/unitTests/test_sparse.R
2bb7113efc3a50fb089284efbdcb9802 *inst/unitTests/test_titv.R
6c5235d30c5b90224dc1ed49869d63a3 *inst/unitTests/test_utils.R
0492186f85aa4ef2fa1ccfcd35df3bc6 *man/Iterator-class.Rd
e6f631effb4edd458b74d2d71f3fe0e3 *man/SeqVarData-class.Rd
0c3118253736032e3da924d6a6479ae1 *man/SeqVarTools-package.Rd
9d68fcff1e1287a8d665e376ddda9bb1 *man/allele-methods.Rd
f5243fa9425c432156732cde6267cc3a *man/alleleFrequency.Rd
361042a3ef01b1ac50661f049068195c *man/alternateAlleleDetection.Rd
921c1243aaf80f7bd66f0d4230c004c7 *man/applyMethod.Rd
5a72ffe6a47b25a37dcfacfa84a3ccae *man/chromWithPAR.Rd
944a9d981198da19a6cdc2da9f40f8be *man/countSingletons.Rd
e841c3eb31512bd1a58738420f056b5a *man/duplicateDiscordance.Rd
2258e87f1eef3791f2d74b9c6e75476c *man/getGenotype.Rd
ffeb94a51e773c52e5bbb4335786cddf *man/getVariableLengthData.Rd
0e88fd9cec89f11c09117102d8467d92 *man/heterozygosity.Rd
b9d64adfcfc4eea7cf4a0c4b725aa426 *man/hwe.Rd
21c00eb4533f68a5ca32dd5fa8f2982f *man/imputedDosage.Rd
1547585baed344ae33eab29a99b6a381 *man/inbreedCoeff.Rd
845bec8812e7a7ff6431a6a7dabd4024 *man/isSNV.Rd
ebcb60d5541224abcaea8a5ec804dbbb *man/isVariant.Rd
0bde796e17182cff8f3b5d3846ed9368 *man/meanBySample.Rd
8face08adff2d5630ffe9019c1cf80a9 *man/mendelErr.Rd
ca68eafdd2a74ca15b3c03d85da4fd3d *man/missingGenotypeRate.Rd
a476e9ddcf79937a228cf04748765b32 *man/pca.Rd
115f9aaca12d49449b7a0cac728d7f4c *man/pedigree.Rd
42e6a8fe8cfd93af53b0420c6fdd4b3c *man/refFrac.Rd
608ad886dab1b10169634f07d36bf5ae *man/regression.Rd
d35e0ddba1213489181bf1f9f2cb7da1 *man/setVariantID.Rd
32c28023d7ad9bc9830ebcd55c2b41b0 *man/titv.Rd
0ca5768f9c59d5de973ca7b4ff174bc8 *man/variantInfo.Rd
a8d7106731063babc68356b930079860 *tests/test.R
9c7a7781ede0df17497e43f0c9ce1c9a *vignettes/Iterators.Rmd
b13468daf122ed7e747cef251a9df3d5 *vignettes/SeqVarTools.Rmd
