b93377a14b09126180fdf1529726a1bb *DESCRIPTION
666f9b8e5b764d4883c96df8fda9265c *NAMESPACE
3c24d70dd8765e435df33e5bc7cf5023 *NEWS
2f5083c42e085347732ac6b719dfc549 *R/AddValue.R
ca2303194824e4abec391924fc53c221 *R/AllClasses.R
34efbeaf2bd11bc6230aacb9ee28ba73 *R/AllGenerics.R
d58eb2354f39c9f452d0c92c7fd4f4e6 *R/ConvVCF2GDS.R
e56f88693ace2efcd3375b6e6f222a19 *R/Conversion.R
b8f70acb9e5dbe07e3522d392ec2e733 *R/Internal.R
946829001be0b1e97b10fda4134a845f *R/Methods-SeqVarGDSClass.R
7665fe27c87c82b3a7ea7e05edd02e1e *R/Methods.R
8f20b23407922248b5adb1a2379c6ebf *R/Summary.R
0c684bb666280e6d4344ab320d0f3e87 *R/UnitList.R
535460c6d532f120d6b9959de7e174c0 *R/Utilities.R
f9fd957eb0d9bec7d15bbdc7dde7fc12 *R/UtilsExport.R
56c423da57ac30503f00671061370621 *R/UtilsMerge.R
6cd956c2717afa1dd922dc1610e7ec60 *R/asVCF.R
fdb9e9a6cb72c8ff22b6e80a15675429 *README.md
58b5b5a7352fece8d8cdf6cb36d109d0 *build/vignette.rds
692623e629bc74bff8b33ccc8a9d9269 *data/KG_P1_SampData.RData
2af23b289bd04dfde5f7f45ea6725a8e *inst/CITATION
23af59bd6466b22cf9b89612222f3194 *inst/doc/OverviewSlides.Rmd
5cff30033fb8ea58fed065dbd9f98f17 *inst/doc/OverviewSlides.html
1090c1ca90a04afa549dc89d68baccd6 *inst/doc/SeqArray.R
f05a124e83c8cc23d11deaf39636b11d *inst/doc/SeqArray.Rmd
abd4144669015bb44a118873dc5fae47 *inst/doc/SeqArray.html
da35c792490f1c6848278a00a4dfee63 *inst/doc/SeqArrayTutorial.R
4081a7945a26bac8b6d1bab6e9294c00 *inst/doc/SeqArrayTutorial.Rmd
44660ee97eccf8fb4f744038a703b8ea *inst/doc/SeqArrayTutorial.html
f634caf6278b05f6023cc23bcf7d9e1c *inst/extdata/1KG_phase1_release_v3_chr22.gds
2144679bb67fc7d30751e61c1d4cce83 *inst/extdata/CEU_Exon.gds
1dee226aad295e72467948b4ae62caf5 *inst/extdata/CEU_Exon.vcf.gz
0978a3ec42efe444574964a49b0843bd *inst/extdata/CEU_Exon.vcf.gz.csi
f73abdcdb92c98ab3dbb6ca8b66fe6ba *inst/extdata/Imputed_dosages.gds
39f29f05d541afe27fda50ae5cf082ea *inst/unitTests/data/Valid.RData
95c59c629b661e9f466d43abd8064a7d *inst/unitTests/test_asVCF.R
0d52a8c2cadbc0fc6ee3ccdabfc924ca *inst/unitTests/test_c.R
9e83fa6604e1e2f93b33647b34f2db3a *inst/unitTests/test_cpp.R
c78408dc793068252f08d9a9e979cd8f *inst/unitTests/test_examples.R
1f669da7817fa8a5804c7c6af33fac7f *inst/unitTests/test_filterpos.R
d643f25c6cbdde28daaaffb30b8ff299 *inst/unitTests/test_func.R
e1ad93ee3ef81e47f524f07bee0fa49f *inst/unitTests/test_utils.R
ce7571728238a97ad521678b69bbf1fd *man/KG_P1_SampData.Rd
9db5c1fe921ee78fad0d6b90dd55549d *man/SeqArray-package.Rd
69bd6b4f37c5503d2d621a4cbf882ec7 *man/SeqVarGDSClass-class.Rd
206266ef6b8332011d7fdbd7db7bc25d *man/seqAddValue.Rd
14aa302582869c0222aab364b2ea71a8 *man/seqAlleleFreq.Rd
b99c920d27a658b8b48edb328ef45a2b *man/seqApply.Rd
d6030fc6c195eaaa15d2277f62df6f4d *man/seqAsVCF.Rd
0a7155c1bbe9501896741dc883c6633f *man/seqBED2GDS.Rd
d928f81c2e4ef2b67d146abec892c412 *man/seqBlockApply.Rd
44d8bdf24fded0fba3e91dd867cb9c20 *man/seqCheck.Rd
99fc26ba68b3ca037bbf8d5ab8e4b0b6 *man/seqClose.Rd
8afd3fd4a44b577b36eb7ad64334560c *man/seqDelete.Rd
a7ab9ef8b3e79fb1ffcd37dff20c1171 *man/seqDigest.Rd
6016b444c7490cdd936a0fe48a28ab42 *man/seqEmptyFile.Rd
df1cc799b9580052a2e1eb633ac296b9 *man/seqExampleFileName.Rd
3b0f4c70d54ea48363432ce5c33bf090 *man/seqExport.Rd
506d56991d0a45e9adb082bfedc6704d *man/seqGDS2SNP.Rd
82a7394874773370a575f26772a1bacb *man/seqGDS2VCF.Rd
a08fd6ba1b3eae86127f90961758f63b *man/seqGet2bGeno.Rd
203706e6142cce09f3c51d3b9ee1b0f9 *man/seqGetData.Rd
bde91b89fc72c266a5eb9df0ecdcb0f7 *man/seqGetFilter.Rd
6c312365187e88f771297e37bcefccd0 *man/seqMerge.Rd
7ca8805b48e19abcd20cc15fed2cb7d9 *man/seqMissing.Rd
a4891d1055d988a0e46976568470945a *man/seqNewVarData.Rd
86042f3745249146344563e443013ca7 *man/seqNumAllele.Rd
d436f013a15c5efcc897bd4f89b7a418 *man/seqOpen.Rd
13d97448a3bb7aedf7c06deb55156f2c *man/seqOptimize.Rd
e965c88262b8d20988e717e2ad4e8684 *man/seqParallel.Rd
b7968d37e3c308950a3865ea213151f1 *man/seqParallelSetup.Rd
b8c78874bd24a44968e009edcbf13c11 *man/seqRecompress.Rd
52d9e0a50d545d327350714563ede82e *man/seqResetVariantID.Rd
ce151c5c6ebd8488b3e0190a85cdf349 *man/seqSNP2GDS.Rd
cd06f25dd5c9670b9958a6395dddec71 *man/seqSetFilter.Rd
857fb530b8a28c1eb0ebe11a0f2dfe90 *man/seqSetFilterCond.Rd
d21cd9315ab437283854324693466cad *man/seqStorageOption.Rd
5d0a2ecce6f217092bbd18086d2d2082 *man/seqSummary.Rd
9a1fa43c75a99c3bc469484c75d19028 *man/seqSystem.Rd
ed47447ab466797102a200d5f30cd9ad *man/seqTranspose.Rd
daa8f52029d843dd8129e6b9f299503d *man/seqUnitApply.Rd
3fa569e12eeb22e632fb8245ba75f7e9 *man/seqUnitFilterCond.Rd
fa63b1da2f6b1e8929917517ebcd5640 *man/seqUnitSlidingWindows.Rd
f0bddf97849127c942e243352d56ca69 *man/seqUnitSubset.Rd
0e75d08743371fb343ee7d6b96be31ed *man/seqVCF2GDS.Rd
fc4fddac91014207e95d48550b0369e0 *man/seqVCF_Header.Rd
21fe99f72dd7b6c4011c216c4f207685 *man/seqVCF_SampID.Rd
c07cb1c5eb6cde79f820373cd962b066 *src/ConvGDS2VCF.cpp
27f014d7938fb65d94dcfd931f2c79f4 *src/ConvToGDS.cpp
d4249a1f90067066c2f0c837a73af126 *src/ConvVCF2GDS.cpp
8dec3f8b01e43e86262d1093ab659566 *src/FileMerge.cpp
724732c7fffbf9a7e7c7e54a9324e909 *src/GetData.cpp
ea9a88ff8277f22d23bfe2a9517fec00 *src/Index.cpp
b44a290138a1a61e72ebd41e0dd57ccb *src/Index.h
ec4b95209b2d7abe10ecfcc875a60f1e *src/LinkSNPRelate.cpp
1ed05138de7c7dfd03c07c8b0a8b731f *src/Makevars
4495e3503acb8505f48134c7f34443e7 *src/Methods.cpp
adbe9e5d90fd0de31201ae50a846aecf *src/R_SeqArray.c
99e8aac5525228ef6ae177b98e37b5bc *src/ReadBySample.cpp
97a7aeab5b86274fd57b694d7a6b9611 *src/ReadBySample.h
4b9081acd16dc55a67a6e8db74e2e193 *src/ReadByUnit.cpp
78662f1591abf047cd0a914fd9d240a1 *src/ReadByVariant.cpp
ad7be3d94a22fca98e2fedbe9ce86ea8 *src/ReadByVariant.h
747f7a24c7004c84c81a2043ac4c4c60 *src/SeqArray.cpp
f3e1a2233389243c874f34bb06f500f9 *src/pkg_test.cpp
372b9b3760fc945aba6a3927bb0ac834 *src/samtools_ext.c
713bfd83d83949a34f27b9b99d131774 *src/vectorization.cpp
aa025ba695b0dfaaa5ffbe191165877d *src/vectorization.h
ee5a9fdf768ac7861fdf9a9c0e171192 *tests/test.R
23af59bd6466b22cf9b89612222f3194 *vignettes/OverviewSlides.Rmd
f05a124e83c8cc23d11deaf39636b11d *vignettes/SeqArray.Rmd
4081a7945a26bac8b6d1bab6e9294c00 *vignettes/SeqArrayTutorial.Rmd
37a2a7baf8a9c0d56cbcb2358dc15d28 *vignettes/benchmark_rand_samp.svg
1399e727cfe248f7a8f898e42ffe71be *vignettes/seqarray_bib.bib
621d59fe6ecb5f3134fed47477750cc6 *vignettes/seqarray_workflow.svg
