a3985f10778ae5b631be68891d493e30 *DESCRIPTION
93c1f66148d7e01b168c33fdf38ad207 *LICENSE
fd3ffa204716f0ef317f59cc41f1700b *NAMESPACE
40dc283b93a63c3d795975df611df141 *NEWS.md
04fa2bdcb93abb810ee35363d1f67605 *R/SMTrack.R
b441f2c80374c9366ecfed45351768cf *R/build_nanopore_plot_matrix.R
f6204a81021e80b967c7a2ac623e483e *R/cleanup.R
fb192b7aaaac1dfb45a8ddbe37c49aaf *R/generateGvizCode.R
1c039c85b0bb4cfced4826edc90fbfbf *R/method.R
93fc5dc9cc3c3cd424521dcfa76157e2 *R/plot_nanopore.R
f72bb05b30ca1c476c7b299b6e1c782a *R/plot_smf_or_dsmf.R
b0416550976372d64dca1fd90293453a *R/sysdata.rda
3a528c0bcbdf46f5707742b2d688c394 *R/write_assigned_states.R
4ba7c327b44cd6dbfc99ad93909741b7 *R/write_intermidates.R
0f4efcae807a9e543c9bfa5a363038b2 *README.md
9ace98b7ef591fa99e3a33a5e296d590 *build/vignette.rds
e57e07181cb9bf508cc0e085c80bc7eb *inst/doc/reference_manual.R
1afce5f37ba736028879c25426750ed0 *inst/doc/reference_manual.html
53b77482373a9289471946cb9198fa29 *inst/doc/reference_manual.rmd
6a36228e380927f7dd0bf38e7a97ef3e *inst/extdata/demo_dsmf.bb
8bae7972610d2dcd55a731577068b47d *man/generateGvizCodeforSMF.Rd
2e78a56b58f4af67245124b167e42443 *man/listTracks.Rd
7ca69667f57e7d194ba0bd31b39c3055 *man/plotFootprints.Rd
59e5016dc181aa9815be0b8490247d72 *man/plotFootprintsUsingLocalBigBed.Rd
ab80740463dfca96c9d9c9b5863e7f6c *man/plotMethylationCallsNanopore.Rd
738cd4fa9f3d1909779ca88ad9e92860 *man/plotMethylationCallsNanoporeUsingLocalBigBed.Rd
3153147d7b9916c7a0b7e746cc24d673 *plots/check.plot.png
8ed834fcdfbc60b03ab80f8ae9dcc087 *plots/peak229.heatmap.png
64edcdfdcf0b21a0025f8d4b56862182 *plots/remove_dup_true.heatmap.png
155632f0dc2e06e0651ed32ab19b53e9 *plots/smac_seq.heatmap.png
28cc9e5e38ae8170e315075e86f023b1 *plots/tss.gviz.pdf
ee4f355970700d9650f66c0784e65037 *plots/tss.gviz.png
8ed834fcdfbc60b03ab80f8ae9dcc087 *vignettes/images/peak229.heatmap.png
ac40285d60fcf78dc87b8d1830707baa *vignettes/images/schematic_for_vignettes.png
155632f0dc2e06e0651ed32ab19b53e9 *vignettes/images/smac_seq.heatmap.png
c67e9d322d039c931458b613acd0d2be *vignettes/images/tss_mm39.gviz.png
53b77482373a9289471946cb9198fa29 *vignettes/reference_manual.rmd
