32d62f36444a9aea7339e47135dc90d7 *DESCRIPTION
6966ff8a427bf8ca5056e1339def0d9f *NAMESPACE
ad6a393c21d9d53c1566d27cb752a221 *NEWS
3fb77e379b8f7461edc8a443cae47b0e *R/assoc_aggregate.r
18fbe8f7cb8377c53aa52980f9e4d341 *R/assoc_gxg.r
0e10186533f99f45703cc239284a0ee8 *R/assoc_single.r
192a29955e6ebb9dcb0f2776598e81ea *R/saige_fitnull.r
ff81d7af7a0cef9e0ed13b5533495a29 *R/saige_grm.r
489cfb590a8188419fd58decbba3bde3 *R/saige_main.r
5c1a8e7438430d3c637dfb4c76735bdc *README.md
1afd6cc29efd5aa11b88be3ee7a454bf *build/vignette.rds
c46066fc27994677b53f4b95f4dd1c74 *inst/CITATION
8c967de83f54011fcf5e318d26ca69b1 *inst/doc/SAIGEgds.R
65df73ed2d990918da75e8e02a763878 *inst/doc/SAIGEgds.Rmd
0095fbceb6f3b4eb0e3cf63423cadf4a *inst/doc/SAIGEgds.html
465b29d35fb6c02dfae6ec34d6d9d8da *inst/doc/SAIGEgds_set-aggr.R
3cbfab11c93d1c9a802331c02f9a114e *inst/doc/SAIGEgds_set-aggr.Rmd
6632e0cacc2b1e412a9970535c1a50d4 *inst/doc/SAIGEgds_set-aggr.html
946ebb209749dc644c5f7c47e19736dc *inst/doc/SAIGEgds_surv.R
959b0b9067a395e7026ec666d041ff51 *inst/doc/SAIGEgds_surv.Rmd
fc76ae91cb4d5fea74d9d96c7a67f289 *inst/doc/SAIGEgds_surv.html
f73abdcdb92c98ab3dbb6ca8b66fe6ba *inst/extdata/assoc_100snp.gds
941b925ee2140ab8511b326614fb5493 *inst/extdata/grm1k_10k_snp.gds
e45109876e46dae0422bbea14fcc7cbe *inst/extdata/grm1k_10k_sp_grm.rds
5e1f18005f80efafdf98fb0678101b61 *inst/extdata/pheno.txt.gz
6733358cef679f5bbcb0ff679f5a2582 *inst/extdata/v_glmm.rds
19d289cc1ab32ad5ac96a04b4f78f20b *inst/unitTests/saige_model.rds
c8aeaf98981dc357f2d006bb71e31ace *inst/unitTests/saige_model_quant.rds
998d467e41bc257e2ff6f9d138c4d4f6 *inst/unitTests/saige_pval.rds
731fef942fded037ac2d42313e781985 *inst/unitTests/saige_pval_quant.rds
cc7c79d135ba84fc2fdff9e557eed1a7 *inst/unitTests/test_SAIGE.R
45fe0d8c172fd16aed508a0274726d92 *man/SAIGEgds-package.Rd
dd6c8b6d8e25f4ef6f48cf9ef5f90750 *man/glmmHeritability.Rd
e74cb3911071ad5d2eab1d2879b7b41f *man/pACAT.Rd
049d5cedc8372cbcc7b2d306888de3c0 *man/seqAssocGLMM_ACAT_O.Rd
ad050d08ca0b36cb31b248a33b8d85a9 *man/seqAssocGLMM_ACAT_V.Rd
a859d3a3e025c2ad6556620e97c48ffe *man/seqAssocGLMM_Burden.Rd
1855c0e2abb1a94cb57645cef8433fd5 *man/seqAssocGLMM_SKAT.Rd
0f725b3ae33b17b7e0720af5e695c209 *man/seqAssocGLMM_SPA.Rd
4c1650b29f7a39371734f0e35e5c7bd9 *man/seqFitNullGLMM_SPA.Rd
917b79a26fe3a58eec73cda898220870 *man/seqFitSparseGRM.Rd
b7ca629f195b0977dea2af671fa5d93d *man/seqGetGenoByGeno.Rd
7624231dec0157ef8a141cb7867f4481 *man/seqSAIGE_LoadPval.Rd
49f7f1ad0fc84ee87061f279f2c295da *man/seqseqFitLDpruning.Rd
90f2ca307cd43b77e11b56da1d4d80c8 *src/Makevars
f6f51b566544fbb9b619930831dff8b6 *src/Makevars.win
be6438934668cb777d6e2507f2b0c0ee *src/SPATest.cpp
99abccdad794fd2331bbf2e88baaf202 *src/gpu_opencl.cpp
bdbc3124e2a16313e8f0c9baf93c4886 *src/gpu_opencl.h
17bf4c95ee8b774783b68b1e755a1846 *src/saige.h
ca79ac2385d2f11a9971d0618c1d35f3 *src/saige_fitnull.cpp
69be79f035c1615d1cbaecbc7ee11212 *src/saige_main.cpp
8ddea9f8ea1d85ac782c7f2b4d177eaf *src/saige_misc.cpp
8175a3a62a368f6f45a7e219d54cbf7f *src/saige_permu.cpp
0fde42d314b93df58218ab544b7fcdf4 *src/saige_surv.cpp
7a4c46122d805293fb8db0eda37ed80c *src/saige_surv.h
ed785f524d72f726c29b4d35cd3ef0d0 *src/vec_ext.h
1d2ae132f8ede5a6cffa88ae01201a37 *src/vec_ext_avx2.cpp
e742102398afd23283287f4ab831e62b *src/vec_ext_avx512bw.cpp
e33b525ade13645be41ed26353579417 *src/vec_ext_def.cpp
f3defeeace56ff47b6ccce4eb94ac09d *src/vectorization.cpp
fa2cfd6d21515d01ae7f296287f538cc *src/vectorization.h
459bd429c2116a7f4cf6943fd5396df1 *tests/runTests.R
65df73ed2d990918da75e8e02a763878 *vignettes/SAIGEgds.Rmd
3cbfab11c93d1c9a802331c02f9a114e *vignettes/SAIGEgds_set-aggr.Rmd
959b0b9067a395e7026ec666d041ff51 *vignettes/SAIGEgds_surv.Rmd
