Package: RnaSeqSampleSize
Type: Package
Title: RnaSeqSampleSize
Version: 2.21.0
Date: 2021-12-02
Authors@R: c(person("Shilin Zhao", "Developer", role = c("aut", "cre"),
                     email = "zhaoshilin@gmail.com"),
              person("Chung-I Li", role = "aut"),
              person("Yan Guo",  role = "aut"),
              person("Quanhu Sheng", role = "aut"),
              person("Yu Shyr",role = "aut"))
Description: RnaSeqSampleSize package provides a sample size calculation method
    based on negative binomial model and the exact test for assessing
    differential expression analysis of RNA-seq data. It controls FDR for 
    multiple testing and utilizes the average read count and dispersion 
    distributions from real data to estimate a more reliable sample size.  
    It is also equipped with several unique features, including estimation for 
    interested genes or pathway, power curve visualization, and parameter 
    optimization.
License: GPL (>= 2)
LazyLoad: yes
Depends: R (>= 4.0.0), ggplot2, RnaSeqSampleSizeData
Imports: biomaRt,edgeR,heatmap3,matlab,KEGGREST,methods,grDevices,
        graphics, stats, Rcpp (>=
        0.11.2),recount,ggpubr,SummarizedExperiment,tidyr,dplyr,tidyselect,utils
LinkingTo: Rcpp
VignetteBuilder: knitr
Suggests: BiocStyle, knitr, testthat
biocViews: ImmunoOncology, ExperimentalDesign, Sequencing, RNASeq,
        GeneExpression, DifferentialExpression
RoxygenNote: 7.1.2
Encoding: UTF-8
git_url: https://git.bioconductor.org/packages/RnaSeqSampleSize
git_branch: devel
git_last_commit: d615113
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
Date/Publication: 2025-11-04
NeedsCompilation: yes
Packaged: 2025-11-05 00:37:28 UTC; biocbuild
Author: Shilin Zhao Developer [aut, cre],
  Chung-I Li [aut],
  Yan Guo [aut],
  Quanhu Sheng [aut],
  Yu Shyr [aut]
Maintainer: Shilin Zhao Developer <zhaoshilin@gmail.com>
