4f4b783f0b9c36c18f8d2ee218c32013 *DESCRIPTION
9a2717c2976473d694edbb5e5e068c03 *LICENSE
22471d6adf3d88779459d9c9112fa13c *NAMESPACE
a909df570ab93b4cd76495b063468a5d *NEWS.md
6f2c06f6ec404cc69113befb71f467bf *R/AllClasses.R
11e53831b0d75c881c81bcdf9553c849 *R/MultiOmicsBridge-package.R
6d2fd7cdec249f5e131103b76fc892d2 *R/MultiOmicsBridgeAnalysis.R
20af43c873888ed32fff3c830e641773 *R/biomarkerDiscovery.R
474d0e0ed18fcfa53340618534b9023c *R/data.R
c6e42708210c265e3050755387558dc5 *R/diagnosticClassifier.R
cc6e1a5b6e18136e82fb26bcbe452be1 *R/generateReport.R
45451e86390c10b0184344ae076bbdb9 *R/internalHelpers.R
9f38bcce57d55904ad0acf612b8e7287 *R/jointDimReduction.R
6bcab27d1bbdc9ffc7e34d29f2627a36 *R/loadHostData.R
31e8dac17d358d33bc0a75561857d05c *R/loadMicrobiomeData.R
b1ab515f9d0aea54a0391aaae8431e5d *R/matchSamples.R
5a560f6aeb0f2eaa54821c37815fa689 *R/plotBiomarkerNetwork.R
ee2d53281d73d741dd86f5401b8a072f *R/plotClassifierComparison.R
68ded5315db5e8955e2b4ff0b6947017 *R/plotIntegration.R
9cd15c9cd6ffcc4c40b410b7be40f6ce *R/plotSankey.R
a38facfe39293e6289621c0266b61b11 *build/vignette.rds
1da8abb72ad0b8405092c89611280080 *inst/doc/MultiOmicsBridge_workflow.R
6f95a66773c0a0847a08e16094418eba *inst/doc/MultiOmicsBridge_workflow.Rmd
0f2e6d9510f8a0354ff4eff06bb3ec82 *inst/doc/MultiOmicsBridge_workflow.html
f040f22358a60467d7756654bece4b31 *inst/extdata/example_multiomics.rds
7abdd5b8b7f1601f6fbe9dbe8e5889bb *inst/scripts/README.md
59253cbf7928ca26ac5aa1243beedcc6 *inst/scripts/make_example_data.R
85b416c9755ec3475f3ce73e2d941857 *inst/scripts/run_benchmark.R
9c364c2ab2b2d54340fa6c67cf336850 *inst/scripts/run_disease_context.R
75f1cbe5947626758d4c1b79fa16a2e5 *inst/scripts/run_geo_host_data.R
dc89f6910f9fba50c351e6f7cee86917 *inst/scripts/run_ibdmdb_demo.R
8f4347412a946d831a57bca69db4c82e *man/MOBResult-class.Rd
4467c4384b31015424bd74c615ffc201 *man/MOBResult.Rd
897f51d6629581272c4ece64c24e8a8f *man/MultiOmicsBridge-package.Rd
83b29cde013ccb535be4e423c1a2ac36 *man/MultiOmicsBridgeAnalysis.Rd
deecbfc46bcc9e9181ebe5a84a43b992 *man/biomarkerDiscovery.Rd
3c7124f9826ca36d1edf1698ee53a4be *man/biomarkers.Rd
9f56fe818206520534a9bf037cfe3b67 *man/diagnosticClassifier.Rd
f9f4af7eb7a3be37deb598ab4db0f060 *man/example_multiomics.Rd
953699e93f04254357022e517d14a7af *man/featureLoadings.Rd
e2b90e5d7180bb3566e460037dea0f67 *man/figures/01_integration_biplot.png
52402107d59768083cf6380d795c5ba5 *man/figures/02_biomarker_network.png
409bd2555191bcf7ce00e62a47033362 *man/figures/03_classifier_comparison_bar.png
5de487fafbabb777986eda5abd052ab8 *man/figures/04_classifier_comparison_roc.png
07a976a50d22befc796b358897ccbf73 *man/figures/05_sankey_flow.png
d77c45d7009db1e7cbdc6b11996514e1 *man/figures/MultiOmicsBridge_IBDMDB_report.txt
ee7961756e328a2ff36de833175aafa7 *man/figures/benchmark_scaling.png
c8bd7debaee7a7b5fc53823f9c21ae79 *man/figures/geo_classifier.png
472aa3a27f84668901a73a0dd0091966 *man/figures/geo_integration.png
06e1955f7023a536a39fae5c323c06e0 *man/figures/geo_network.png
0ad844e9cd24bfa2c3496bf3d39b47c0 *man/figures/geo_sankey.png
bd79135876709c170acaf8739baf7458 *man/figures/hiv_classifier.png
a0762b81f5889ce6a46411259bea9ca1 *man/figures/hiv_integration.png
a128bfd09ac5d2ff09041352abba55c7 *man/figures/hiv_network.png
bd79135876709c170acaf8739baf7458 *man/figures/tb_classifier.png
5994347706deebe5f8cf4f7bddc4b4b3 *man/figures/tb_integration.png
48f4f68fec57bf8289084ed6a20a868a *man/figures/tb_sankey.png
f41faf19cf51d9a8afccc45e7044f89c *man/generateReport.Rd
c3ba96367a985214cb5f54c7b35d8b74 *man/integrationScores.Rd
845df30d811c22250a58cfdbe76750b9 *man/jointDimReduction.Rd
b38629199a3fd09a36585b6339cc3445 *man/loadHostData.Rd
0016c0c24f15d21174d0fe3736cf98b1 *man/loadMicrobiomeData.Rd
a26fb8cced56633f5e54d35b4322c9b1 *man/matchSamples.Rd
96be40eab6416881519d95fcbe3bd695 *man/performance.Rd
178324d365e27379e44678db75094b77 *man/plotBiomarkerNetwork.Rd
71147ec35254dfff392fec0376fb64b9 *man/plotClassifierComparison.Rd
61f7669a12e3332f74bc64c5d3fcb652 *man/plotIntegration.Rd
00e524c76469c426d3a96133a650131c *man/plotSankey.Rd
9efce11e726b8511a266f05a330c441b *man/show-MOBResult-method.Rd
6c184e8bc81004910d5cf9c72dc499e8 *tests/testthat.R
cbdad6ff26ae74eda4648e1fe62a1b0e *tests/testthat/test-MultiOmicsBridge.R
6f95a66773c0a0847a08e16094418eba *vignettes/MultiOmicsBridge_workflow.Rmd
