# Generated by roxygen2: do not edit by hand

export(Arrange_plots)
export(Execute_AUCell)
export(Execute_AUCell_parallel)
export(Execute_E_M_plot)
export(Execute_GSVA)
export(Execute_GSVA_parallel)
export(Execute_JAS)
export(Execute_JASMINE_parallel)
export(Execute_M_dimension_plot)
export(Execute_SCSE)
export(Execute_SCSE_parallel)
export(Execute_nnPCA)
export(Execute_nnPCA_parallel)
export(Execute_ssGSEA)
export(Execute_ssGSEA_parallel)
export(add_EMT_score)
export(add_EMT_score_Bulk)
export(add_EMT_score_multiple)
export(compute_Signature_score)
export(compute_Signature_score_SingleCell)
export(correlate_sample_scores)
export(data_prepare)
export(filter_gmt_by_reference)
export(plot_EMT_from_objects)
export(plot_heatmap_function)
export(predict_cluster_labels)
export(read_gmt)
export(write_gmt)
import(Matrix)
import(ggplot2)
import(mclust)
importFrom(AUCell,AUCell_buildRankings)
importFrom(AUCell,AUCell_calcAUC)
importFrom(AUCell,getAUC)
importFrom(BiocParallel,MulticoreParam)
importFrom(BiocParallel,bplapply)
importFrom(ComplexHeatmap,Heatmap)
importFrom(ComplexHeatmap,HeatmapAnnotation)
importFrom(ComplexHeatmap,rowAnnotation)
importFrom(GSA,GSA.read.gmt)
importFrom(GSEABase,geneIds)
importFrom(GSEABase,getGmt)
importFrom(GSEABase,setName)
importFrom(GSEABase,toGmt)
importFrom(GSVA,gsva)
importFrom(GSVA,gsvaParam)
importFrom(GSVA,ssgseaParam)
importFrom(Seurat,AddMetaData)
importFrom(Seurat,AddModuleScore)
importFrom(Seurat,GetAssayData)
importFrom(Seurat,UpdateSeuratObject)
importFrom(Seurat,as.Seurat)
importFrom(circlize,colorRamp2)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,n)
importFrom(dplyr,summarise)
importFrom(ggpubr,annotate_figure)
importFrom(ggpubr,ggarrange)
importFrom(ggpubr,text_grob)
importFrom(magrittr,"%>%")
importFrom(nsprcomp,nsprcomp)
importFrom(rlang,sym)
importFrom(stats,complete.cases)
importFrom(stats,cor)
importFrom(stats,cor.test)
importFrom(stats,kmeans)
importFrom(stats,sd)
importFrom(utils,download.file)
importFrom(utils,read.delim)
