1df54b7748805ea3846932eb30de9fb0 *DESCRIPTION
c17956f3925d752df93bcb58d80880bc *NAMESPACE
9022fc733a1e505a87c3393937f9f2db *R/DBA.R
8c991c920826053ee368b56669782516 *R/RcppExports.R
04c93a90bdfd6cee97686c015566fc42 *R/analyze.R
e8e3f8ccaf7777c664dcf4e65b35454a *R/analyze_deseq2.R
5a445febfcb76331f4c3800341d18d80 *R/analyze_edgeR.R
5a69bc545ee5d9ef442d001b4ab2bd44 *R/blacklist.R
65cbf13f904b617425a69832b2c86e42 *R/contrast.R
afd04989f1eabdb8139c5f15543438ab *R/core.R
9fc11f0103fc86038df8319299a19ee4 *R/counts.R
7ade8ce185e09cc3f80a78e745ddc303 *R/cpp_wrapper.R
8b7742f7168ed6d2a9a0a1806104acae *R/helper.R
6b249d37c241523aed29d30a1dd13da9 *R/io.R
e0948a9cde05cffd4a87e4bdc8e6dbde *R/model.R
736a5781d2e3da65fabe087212636a65 *R/normalize.R
3dc98b6255a01b0e3b1d68cf0d446865 *R/parallel.R
d3f036e872d60f4c20bc3344d6111347 *R/plotProfile.R
d2d2922e2b087a81cd3c4664356c2092 *R/plots.R
ac0ed53aa844005c08d70698be13ebad *R/report.R
d4fd7cd87e1a485fe90697da6981839d *R/utils.R
e7faccf4310cf9bf7d781141e25a73e9 *build/vignette.rds
866ab5c34a0685e7389e6bec97e09457 *data/datalist
e781e26ba7ef1504ca844b8115148d94 *data/tamoxifen_analysis.rda
70842f89055402bb906275a50d5513f2 *data/tamoxifen_counts.rda
cbd0b3fcb8d25fd242601cdf06a7eb68 *data/tamoxifen_greylist.rda
8ae1f1a0eb71715db122d60ce12bc7f2 *data/tamoxifen_peaks.rda
677f7534eac01c2585952c86a38523c5 *inst/CITATION
8fb99a24d557d9bfa16374082bc985db *inst/NEWS.Rd
a28ad3fe3dc65acc5653bf40efb976cb *inst/doc/DiffBind.R
f1142dbf78b29e5ffd304bcc5951c2bb *inst/doc/DiffBind.Rnw
68db31b2e2ef0537179323a83ce7fa5c *inst/doc/DiffBind.pdf
1cacd1fe77983735ee8c9ad77300f810 *inst/extra/GenerateDataFiles.R
ac2926261ee728c6e21711f844a7b2d8 *inst/extra/GenerateSpikein.R
9428576d469a5907f71d83e836b79494 *inst/extra/config.csv
13b0ff9fa56af473a09e5519d7b48716 *inst/extra/ktypes.rda
060c98c62a827d973ef898c2f2674086 *inst/extra/parallelFactor.rda
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4a975ba49c663ac4889b15b64799708c *inst/extra/peaks/BT474_ER_2.bed.gz
85e25b31292cc904d743a72348412a8f *inst/extra/peaks/MCF7_ER_1.bed.gz
12fc34e7ca32b85a8ee37b7e48c28b2c *inst/extra/peaks/MCF7_ER_2.bed.gz
d00240c0a42b2ec49e6c7ebbc478654d *inst/extra/peaks/MCF7_ER_3.bed.gz
5f60e94ded776972f86a7b888283c739 *inst/extra/peaks/T47D_ER_1.bed.gz
abadc9c3e5d5a4af5ede63db0f2460cf *inst/extra/peaks/T47D_ER_2.bed.gz
861d9979fb2804769a8064601d65b4f3 *inst/extra/peaks/TAMR_ER_1.bed.gz
6cd0a2f56a33f879298732112e796c8c *inst/extra/peaks/TAMR_ER_2.bed.gz
a76aa60c30b61edfaf886c21559c16ac *inst/extra/peaks/ZR75_ER_1.bed.gz
83f2ad0a9f4d6e1172e3281489389702 *inst/extra/peaks/ZR75_ER_2.bed.gz
086a7f380a2723deb3bfd2495f14bf87 *inst/extra/plotProfileDemo.Rmd
ba39355a31b749021fa0bf58e995ec9e *inst/extra/spikes.rda
ee99b29604109a5dc02e097a5fe33e55 *inst/extra/tamoxifen.csv
1886c4161e49acd51381011c86aad518 *inst/extra/tamoxifen_GEO.R
2c0b1d69b826071919d09d63ed201fa6 *inst/extra/tamoxifen_GEO.csv
163c88f0bd92026d51caf134ab017375 *inst/extra/tamoxifen_allfields.csv
6220b882619c7630fb575640fe582640 *inst/extra/testdata/bed_with_header.bed.gz
71e520539a3a9cd76f8cc47453dae2a8 *inst/extra/testdata/bed_without_header.bed.gz
8bc290017de0aa77f499cae0603f4919 *inst/extra/testdata/raw_with_header.raw.gz
7100afa443b5e1df616ff0fddc9378e8 *inst/extra/testdata/raw_without_header.raw.gz
bb6f9956293bd51f9dba5f7c11fc22f7 *inst/extra/testdata/test_sampleSheet_Spaces.csv
022683e5da08687bb7f563a0e61d05a7 *inst/extra/testdata/test_sampleSheet_Spaces.xlsx
a1d35f9b21b8a8c9bda48342f10eb70f *inst/extra/testdata/test_sampleSheet_comment_char.csv
a73951c045750022d58dfffe718b6d26 *man/DiffBind-globals.Rd
3a328a6a9abcad3674849e884b7ed8c0 *man/DiffBind-package.Rd
5a7b57f15f876f816e89617150b314cd *man/DiffBind3.Rd
87eb51a375504ba3da3a42ef82a7fee2 *man/dba.Rd
7b4e483a86287522779e23aeaf390e87 *man/dba.analyze.Rd
1ba4c9e8d0f871caa6b009d524662b6e *man/dba.blacklist.Rd
645daf0d4d5c794992949ae8faf803f8 *man/dba.contrast.Rd
fffd0392a0dcc27b99099d3ccfc3cdd9 *man/dba.count.Rd
f8183c52d2206fd4419e03075a60b015 *man/dba.load.Rd
17de19ff33caf5d45d8ba2a2bb91a398 *man/dba.mask.Rd
1a447cec67d21d0783b2a9c024a3785e *man/dba.normalize.Rd
8042be381a47f4137207d6fac4bce394 *man/dba.overlap.Rd
cfc2267d724119d05a99c34caddd556d *man/dba.peakset.Rd
54ea428486153505a47a61357ea7db1f *man/dba.plotBox.Rd
07a752b113ad9c8b591460c662645f73 *man/dba.plotHeatmap.Rd
fe53799f9e89f455c92cb4fc69bbad42 *man/dba.plotMA.Rd
852bbb438e08fb8b479a8e970859195b *man/dba.plotPCA.Rd
fea953252ff213390c64732f0706a12c *man/dba.plotProfile.rd
fa7db558621a0c509b394a9d10409f9b *man/dba.plotVenn.Rd
e491c6507c6c26fa1f5583c08470d17d *man/dba.plotVolcano.Rd
0ec4f9e9fe64c36361485e3a7d172af5 *man/dba.report.Rd
a8029700bc260d1f48efcf488a080c7a *man/dba.save.Rd
72fa9cef480c91ec2cae20173a7969e7 *man/dba.show.Rd
5755dbab137d56fb2b50627e5c46fbcb *man/print.DBA.Rd
7490cce976d8d4115af628214d904ca0 *man/tamoxifen.Rd
e426672c9bde38321386961a36aecac2 *src/Makevars
63fe8c0a4c414f4312ce6a804a46174d *src/RcppExports.cpp
8b2f28669c7c1c929ffb96334983a561 *src/bamReader.cpp
4110519036e4f7b1c6fa5dc365d4cb11 *src/bamReader.h
b6f4b3f91a93e5a5b9d3019ee537bb64 *src/bam_plbuf.c
7ff2712d5bdbdb035bac0efacf94bd8d *src/bedReader.cpp
6fa6a91f2de24c13e365cf7fa825b28e *src/bedReader.h
7567b65ae2526223c15dc881472f7499 *src/bitBucket.cpp
fe78540fb5aac73279d9d7c92e4d8f8a *src/bitBucket.h
703af74b53e0fbb57f97271ebe13ff9d *src/croi_func.cpp
ebdc56eb70937776e24ae3702f56ccc9 *src/croi_func.h
4ddfecd9deb354caa9538aa00fe784e5 *src/croi_main.cpp
5cffe3b18ee415c14ef89b5e17dc5dfa *src/densitySet.cpp
09792cd417e93d28de5627f95de74c4c *src/densitySet.h
7067523d763dc4de32b8271fc336c967 *src/iBucket.cpp
b5a3f02a6879a783744e9157e5efc3b8 *src/iBucket.h
39325204f53b5e71d3fc2b6ce7126cea *src/interval.cpp
f9540f6f879c628e6737030ee940397c *src/interval.h
33eab710fb356ad5fcf01892122e01a2 *src/intervalDensity.cpp
24ff1d9bd51ee17a9fb59fffd06a5b0c *src/intervalDensity.h
6a27997f006ce0aa6e1ba5248f0e5325 *src/intervalNode.cpp
664fe6bce92e58f4bc7d2bbc79bf17a2 *src/intervalNode.h
469452d00706172c4869818d783ad892 *src/intervalSet.cpp
22faf0c4cc6117ba0946cac0b7bb23eb *src/intervalSet.h
cd91d5f42896a85a794bf1e4d4923265 *src/intervalTree.cpp
ad77a22d349ce78002f6e069bc0cdef0 *src/intervalTree.h
4d0714b234c1c922c5ea8baf731af7b0 *src/merge.cpp
55436ceae8b07746432e82921e136ab6 *src/mergeOne.c
5aaece79bd9cf1d299cdd8c30c07e21e *src/nodeGroup.cpp
577170a02779ee42dd15fb335f6486c4 *src/nodeGroup.h
c396a78e3c095674da926888ed9f81d8 *src/peakOrder.cpp
d370d22129188eca94bc22a9bdc029fa *src/reader.cpp
e7dbb2d6de42876f00fc433c08f23a25 *src/reader.h
2194f751cc49fb288974b0e1d1991ed5 *src/sequence.cpp
9665bc8c9323e402a75c4ef16117da46 *src/sequence.h
3d833c34f09d55902e3deace8b6d8321 *src/util.cpp
2d2f25e761a20ca5cc3ebddb1c2bcbf6 *src/util.h
52198666721a346e7fc0d2809b4fdc27 *tests/testthat.R
f46f660eb332e71a67c7728ce8cceeb0 *tests/testthat/test_cmerge.R
d0c7b715b129613805c814e359aabf23 *tests/testthat/test_csort.R
dba696689baaea3dabc9c0b62e48815f *tests/testthat/test_loadSampleSheet.R
289b3378cac917cc1a693576271eedf1 *tests/testthat/test_normalize.R
4a01941ab3ace6eebe9c17544445576b *tests/testthat/test_readPeaks.R
998e468b6bcc9ebc1185fa0fdddb7042 *tests/testthat/test_saveload.R
f1142dbf78b29e5ffd304bcc5951c2bb *vignettes/DiffBind.Rnw
422f53be646243048814b09ac621fa97 *vignettes/DiffBind.bib
2c4bb68fcf920ec89f71699a3eab337a *vignettes/plotProfile-MCF7.png
ce08fa0f5ba31ab999a76ce5dab2f86f *vignettes/plotProfile-default.png
64a5b17be7f6c0c5187a05c0eb195d8a *vignettes/plotProfile-merge.png
